Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02383 and ECD_02384 are separated by 21 nucleotides ECD_02384 and ECD_02385 are separated by 37 nucleotides
ECD_02383: ECD_02383 - hydrogenase-4 transcriptional activator, at 2,476,381 to 2,478,393
_02383
ECD_02384: ECD_02384 - putative formate transporter, at 2,478,415 to 2,479,263
_02384
ECD_02385: ECD_02385 - putative UPF0118 family inner membrane permease, at 2,479,301 to 2,480,362
_02385
Position (kb)
2478
2479
2480 Strain fitness (log2 ratio)
-2
-1
0
1 at 2477.421 kb on + strand, within ECD_02383 at 2477.421 kb on + strand, within ECD_02383 at 2477.422 kb on - strand, within ECD_02383 at 2477.422 kb on - strand, within ECD_02383 at 2477.425 kb on + strand, within ECD_02383 at 2477.425 kb on + strand, within ECD_02383 at 2477.450 kb on + strand, within ECD_02383 at 2477.462 kb on + strand, within ECD_02383 at 2477.462 kb on + strand, within ECD_02383 at 2477.466 kb on + strand, within ECD_02383 at 2477.487 kb on + strand, within ECD_02383 at 2477.488 kb on - strand, within ECD_02383 at 2477.553 kb on + strand, within ECD_02383 at 2477.766 kb on - strand, within ECD_02383 at 2478.269 kb on + strand at 2478.392 kb on - strand at 2478.410 kb on + strand at 2478.410 kb on + strand at 2478.410 kb on + strand at 2478.410 kb on + strand at 2478.410 kb on + strand at 2478.411 kb on - strand at 2478.411 kb on - strand at 2478.411 kb on - strand at 2478.726 kb on + strand, within ECD_02384 at 2478.726 kb on + strand, within ECD_02384 at 2479.161 kb on + strand, within ECD_02384 at 2479.225 kb on - strand at 2479.243 kb on + strand at 2479.243 kb on + strand at 2479.244 kb on - strand at 2479.244 kb on - strand at 2479.244 kb on - strand at 2479.247 kb on + strand at 2479.247 kb on + strand at 2479.313 kb on + strand at 2479.427 kb on - strand, within ECD_02385 at 2479.475 kb on + strand, within ECD_02385 at 2479.603 kb on - strand, within ECD_02385 at 2479.870 kb on - strand, within ECD_02385 at 2479.975 kb on + strand, within ECD_02385 at 2480.067 kb on - strand, within ECD_02385 at 2480.070 kb on + strand, within ECD_02385 at 2480.071 kb on - strand, within ECD_02385 at 2480.071 kb on - strand, within ECD_02385 at 2480.123 kb on + strand, within ECD_02385 at 2480.123 kb on + strand, within ECD_02385 at 2480.123 kb on + strand, within ECD_02385 at 2480.124 kb on - strand, within ECD_02385 at 2480.124 kb on - strand, within ECD_02385 at 2480.124 kb on - strand, within ECD_02385 at 2480.125 kb on + strand, within ECD_02385 at 2480.126 kb on - strand, within ECD_02385 at 2480.126 kb on - strand, within ECD_02385 at 2480.144 kb on + strand, within ECD_02385 at 2480.179 kb on + strand, within ECD_02385
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 2,477,421 + ECD_02383 0.52 -0.5 2,477,421 + ECD_02383 0.52 -0.3 2,477,422 - ECD_02383 0.52 +0.2 2,477,422 - ECD_02383 0.52 -0.0 2,477,425 + ECD_02383 0.52 +0.2 2,477,425 + ECD_02383 0.52 +0.1 2,477,450 + ECD_02383 0.53 -0.7 2,477,462 + ECD_02383 0.54 +0.9 2,477,462 + ECD_02383 0.54 -0.6 2,477,466 + ECD_02383 0.54 -0.1 2,477,487 + ECD_02383 0.55 -1.7 2,477,488 - ECD_02383 0.55 -0.7 2,477,553 + ECD_02383 0.58 -0.3 2,477,766 - ECD_02383 0.69 -1.5 2,478,269 + +1.4 2,478,392 - -0.8 2,478,410 + +0.6 2,478,410 + -1.2 2,478,410 + +0.4 2,478,410 + -1.9 2,478,410 + -1.0 2,478,411 - +0.1 2,478,411 - +0.2 2,478,411 - -0.5 2,478,726 + ECD_02384 0.37 +0.2 2,478,726 + ECD_02384 0.37 -0.4 2,479,161 + ECD_02384 0.88 +1.1 2,479,225 - +0.9 2,479,243 + +0.5 2,479,243 + -0.8 2,479,244 - +0.6 2,479,244 - -0.0 2,479,244 - +1.2 2,479,247 + +0.2 2,479,247 + -0.2 2,479,313 + +0.1 2,479,427 - ECD_02385 0.12 +0.2 2,479,475 + ECD_02385 0.16 -0.4 2,479,603 - ECD_02385 0.28 +1.0 2,479,870 - ECD_02385 0.54 +1.0 2,479,975 + ECD_02385 0.63 +0.1 2,480,067 - ECD_02385 0.72 -0.0 2,480,070 + ECD_02385 0.72 +0.3 2,480,071 - ECD_02385 0.73 +1.4 2,480,071 - ECD_02385 0.73 -0.0 2,480,123 + ECD_02385 0.77 -0.1 2,480,123 + ECD_02385 0.77 -0.1 2,480,123 + ECD_02385 0.77 +0.9 2,480,124 - ECD_02385 0.77 -0.4 2,480,124 - ECD_02385 0.77 +0.4 2,480,124 - ECD_02385 0.77 -0.4 2,480,125 + ECD_02385 0.78 -0.1 2,480,126 - ECD_02385 0.78 +1.1 2,480,126 - ECD_02385 0.78 -0.4 2,480,144 + ECD_02385 0.79 -1.4 2,480,179 + ECD_02385 0.83 -0.4
Or see this region's nucleotide sequence