Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02192 and ECD_02193 are separated by 78 nucleotides ECD_02193 and ECD_02194 are separated by 54 nucleotides ECD_02194 and ECD_02195 are separated by 64 nucleotides ECD_02195 and ECD_02196 are separated by 187 nucleotides
ECD_02192: ECD_02192 - isochorismate synthase 2, at 2,269,522 to 2,270,817
_02192
ECD_02193: ECD_02193 - putative membrane-anchored DUF883 family ribosome-binding protein, at 2,270,896 to 2,271,201
_02193
ECD_02194: ECD_02194 - GNAT family putative N-acetyltransferase, at 2,271,256 to 2,271,717
_02194
ECD_02195: ECD_02195 - RNase BN, tRNA processing enzyme, at 2,271,782 to 2,272,699
_02195
ECD_02196: ECD_02196 - protease, capable of cleaving an AMC-ubiquitin model substrate, at 2,272,887 to 2,274,098
_02196
Position (kb)
2271
2272
2273 Strain fitness (log2 ratio)
-2
-1
0
1 at 2270.806 kb on - strand at 2270.921 kb on - strand at 2270.979 kb on - strand, within ECD_02193 at 2270.979 kb on - strand, within ECD_02193 at 2271.015 kb on - strand, within ECD_02193 at 2271.018 kb on - strand, within ECD_02193 at 2271.018 kb on - strand, within ECD_02193 at 2271.018 kb on - strand, within ECD_02193 at 2271.018 kb on - strand, within ECD_02193 at 2271.018 kb on - strand, within ECD_02193 at 2271.095 kb on + strand, within ECD_02193 at 2271.180 kb on + strand at 2271.234 kb on - strand at 2271.237 kb on + strand at 2271.238 kb on - strand at 2271.238 kb on - strand at 2271.311 kb on + strand, within ECD_02194 at 2271.347 kb on + strand, within ECD_02194 at 2271.409 kb on - strand, within ECD_02194 at 2271.666 kb on - strand, within ECD_02194 at 2271.718 kb on - strand at 2271.737 kb on + strand at 2271.737 kb on + strand at 2271.738 kb on - strand at 2271.738 kb on - strand at 2271.738 kb on - strand at 2271.745 kb on - strand at 2272.025 kb on - strand, within ECD_02195 at 2272.218 kb on - strand, within ECD_02195 at 2272.229 kb on - strand, within ECD_02195 at 2272.258 kb on - strand, within ECD_02195 at 2272.273 kb on - strand, within ECD_02195 at 2272.375 kb on - strand, within ECD_02195 at 2272.375 kb on - strand, within ECD_02195 at 2272.491 kb on + strand, within ECD_02195 at 2272.759 kb on - strand at 2272.759 kb on - strand at 2272.799 kb on + strand at 2273.040 kb on - strand, within ECD_02196
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 2,270,806 - -0.5 2,270,921 - +0.9 2,270,979 - ECD_02193 0.27 +0.2 2,270,979 - ECD_02193 0.27 -0.9 2,271,015 - ECD_02193 0.39 -0.4 2,271,018 - ECD_02193 0.40 +0.4 2,271,018 - ECD_02193 0.40 +0.8 2,271,018 - ECD_02193 0.40 +0.9 2,271,018 - ECD_02193 0.40 -1.5 2,271,018 - ECD_02193 0.40 -0.1 2,271,095 + ECD_02193 0.65 +0.3 2,271,180 + +0.8 2,271,234 - -0.6 2,271,237 + +0.6 2,271,238 - +0.2 2,271,238 - +1.3 2,271,311 + ECD_02194 0.12 +0.6 2,271,347 + ECD_02194 0.20 -1.8 2,271,409 - ECD_02194 0.33 +0.2 2,271,666 - ECD_02194 0.89 -0.7 2,271,718 - -0.6 2,271,737 + -0.3 2,271,737 + +0.2 2,271,738 - -1.4 2,271,738 - -0.4 2,271,738 - -1.6 2,271,745 - -0.2 2,272,025 - ECD_02195 0.26 +0.1 2,272,218 - ECD_02195 0.47 -0.6 2,272,229 - ECD_02195 0.49 -0.9 2,272,258 - ECD_02195 0.52 -1.0 2,272,273 - ECD_02195 0.53 -0.8 2,272,375 - ECD_02195 0.65 +0.4 2,272,375 - ECD_02195 0.65 -1.2 2,272,491 + ECD_02195 0.77 +1.0 2,272,759 - +0.8 2,272,759 - -0.3 2,272,799 + -0.2 2,273,040 - ECD_02196 0.13 +1.1
Or see this region's nucleotide sequence