Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02049 and ECD_02050 overlap by 8 nucleotides ECD_02050 and ECD_02051 overlap by 4 nucleotides
ECD_02049: ECD_02049 - uncharacterized protein, at 2,100,557 to 2,102,836
_02049
ECD_02050: ECD_02050 - VMA domain putative YehL ATPase stimulator, at 2,102,829 to 2,103,965
_02050
ECD_02051: ECD_02051 - hypothetical protein, at 2,103,962 to 2,105,962
_02051
Position (kb)
2102
2103
2104 Strain fitness (log2 ratio)
-1
0
1 at 2102.011 kb on + strand, within ECD_02049 at 2102.055 kb on + strand, within ECD_02049 at 2102.127 kb on + strand, within ECD_02049 at 2102.178 kb on + strand, within ECD_02049 at 2102.310 kb on + strand, within ECD_02049 at 2102.310 kb on + strand, within ECD_02049 at 2102.427 kb on + strand, within ECD_02049 at 2102.428 kb on - strand, within ECD_02049 at 2102.589 kb on + strand, within ECD_02049 at 2102.634 kb on + strand at 2103.159 kb on - strand, within ECD_02050 at 2103.339 kb on - strand, within ECD_02050 at 2103.973 kb on - strand at 2103.987 kb on + strand at 2103.987 kb on + strand at 2104.190 kb on - strand, within ECD_02051 at 2104.495 kb on - strand, within ECD_02051 at 2104.551 kb on + strand, within ECD_02051 at 2104.552 kb on - strand, within ECD_02051 at 2104.631 kb on + strand, within ECD_02051 at 2104.632 kb on - strand, within ECD_02051 at 2104.656 kb on + strand, within ECD_02051 at 2104.684 kb on + strand, within ECD_02051 at 2104.812 kb on - strand, within ECD_02051
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 2,102,011 + ECD_02049 0.64 +0.8 2,102,055 + ECD_02049 0.66 -1.1 2,102,127 + ECD_02049 0.69 +0.8 2,102,178 + ECD_02049 0.71 -0.0 2,102,310 + ECD_02049 0.77 -0.1 2,102,310 + ECD_02049 0.77 -0.5 2,102,427 + ECD_02049 0.82 +0.2 2,102,428 - ECD_02049 0.82 -1.2 2,102,589 + ECD_02049 0.89 +0.7 2,102,634 + -1.5 2,103,159 - ECD_02050 0.29 -0.1 2,103,339 - ECD_02050 0.45 +0.6 2,103,973 - +1.0 2,103,987 + +1.6 2,103,987 + +0.8 2,104,190 - ECD_02051 0.11 +1.0 2,104,495 - ECD_02051 0.27 +1.0 2,104,551 + ECD_02051 0.29 +0.3 2,104,552 - ECD_02051 0.29 +0.2 2,104,631 + ECD_02051 0.33 +0.5 2,104,632 - ECD_02051 0.33 +0.5 2,104,656 + ECD_02051 0.35 +0.3 2,104,684 + ECD_02051 0.36 +0.0 2,104,812 - ECD_02051 0.42 +0.7
Or see this region's nucleotide sequence