Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01957 and ECD_01958 are separated by 2 nucleotides ECD_01958 and ECD_01959 are separated by 2 nucleotides ECD_01959 and ECD_01960 are separated by 26 nucleotides ECD_01960 and ECD_01961 are separated by 15 nucleotides
ECD_01957: ECD_01957 - GDP-mannose mannosyl hydrolase, at 2,024,749 to 2,025,228
_01957
ECD_01958: ECD_01958 - bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase, at 2,025,231 to 2,026,196
_01958
ECD_01959: ECD_01959 - GDP-D-mannose dehydratase, NAD(P)-binding, at 2,026,199 to 2,027,320
_01959
ECD_01960: ECD_01960 - putative acyl transferase, at 2,027,347 to 2,027,895
_01960
ECD_01961: ECD_01961 - putative glycosyl transferase, at 2,027,911 to 2,028,657
_01961
Position (kb)
2026
2027
2028 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2025.233 kb on - strand at 2025.271 kb on + strand at 2025.360 kb on - strand, within ECD_01958 at 2025.748 kb on + strand, within ECD_01958 at 2025.869 kb on + strand, within ECD_01958 at 2025.870 kb on - strand, within ECD_01958 at 2026.098 kb on + strand, within ECD_01958 at 2026.099 kb on - strand, within ECD_01958 at 2026.228 kb on - strand at 2026.544 kb on + strand, within ECD_01959 at 2026.620 kb on - strand, within ECD_01959 at 2026.620 kb on - strand, within ECD_01959 at 2026.833 kb on + strand, within ECD_01959 at 2027.017 kb on + strand, within ECD_01959 at 2027.120 kb on - strand, within ECD_01959 at 2027.120 kb on - strand, within ECD_01959 at 2027.272 kb on - strand at 2027.530 kb on - strand, within ECD_01960 at 2027.579 kb on - strand, within ECD_01960
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 2,025,233 - -2.0 2,025,271 + -0.7 2,025,360 - ECD_01958 0.13 +0.2 2,025,748 + ECD_01958 0.54 +0.2 2,025,869 + ECD_01958 0.66 -0.1 2,025,870 - ECD_01958 0.66 +0.1 2,026,098 + ECD_01958 0.90 +0.0 2,026,099 - ECD_01958 0.90 +0.1 2,026,228 - -1.4 2,026,544 + ECD_01959 0.31 +0.3 2,026,620 - ECD_01959 0.38 -1.1 2,026,620 - ECD_01959 0.38 -0.8 2,026,833 + ECD_01959 0.57 +1.8 2,027,017 + ECD_01959 0.73 -0.7 2,027,120 - ECD_01959 0.82 +0.3 2,027,120 - ECD_01959 0.82 -1.0 2,027,272 - -0.3 2,027,530 - ECD_01960 0.33 -1.6 2,027,579 - ECD_01960 0.42 -0.7
Or see this region's nucleotide sequence