Strain Fitness in Escherichia coli BL21 around ECD_01868

Experiment: Control_TnJ

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01867 and ECD_01868 are separated by 14 nucleotidesECD_01868 and ECD_01869 are separated by 69 nucleotides ECD_01867: ECD_01867 - L-arabinose ABC transporter permease, at 1,927,696 to 1,928,682 _01867 ECD_01868: ECD_01868 - L-arabinose ABC transporter ATPase, at 1,928,697 to 1,930,211 _01868 ECD_01869: ECD_01869 - L-arabinose ABC transporter periplasmic binding protein, at 1,930,281 to 1,931,270 _01869 Position (kb) 1928 1929 1930 1931Strain fitness (log2 ratio) -2 -1 0 1 2at 1927.773 kb on - strandat 1927.773 kb on - strandat 1928.088 kb on + strand, within ECD_01867at 1928.296 kb on + strand, within ECD_01867at 1928.646 kb on + strandat 1928.647 kb on - strandat 1928.895 kb on - strand, within ECD_01868at 1928.895 kb on - strand, within ECD_01868at 1929.106 kb on - strand, within ECD_01868at 1929.128 kb on + strand, within ECD_01868at 1929.243 kb on - strand, within ECD_01868at 1929.387 kb on + strand, within ECD_01868at 1929.550 kb on + strand, within ECD_01868at 1929.619 kb on + strand, within ECD_01868at 1929.622 kb on - strand, within ECD_01868at 1930.133 kb on + strandat 1930.341 kb on + strandat 1930.418 kb on + strand, within ECD_01869at 1930.429 kb on - strand, within ECD_01869at 1930.479 kb on - strand, within ECD_01869at 1930.836 kb on - strand, within ECD_01869at 1930.836 kb on - strand, within ECD_01869at 1930.837 kb on + strand, within ECD_01869at 1931.010 kb on - strand, within ECD_01869

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnJ
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1,927,773 - -0.8
1,927,773 - +0.1
1,928,088 + ECD_01867 0.40 -0.1
1,928,296 + ECD_01867 0.61 -0.1
1,928,646 + -2.1
1,928,647 - +0.5
1,928,895 - ECD_01868 0.13 -0.9
1,928,895 - ECD_01868 0.13 -0.0
1,929,106 - ECD_01868 0.27 +0.2
1,929,128 + ECD_01868 0.28 +0.5
1,929,243 - ECD_01868 0.36 +0.8
1,929,387 + ECD_01868 0.46 +0.8
1,929,550 + ECD_01868 0.56 -1.5
1,929,619 + ECD_01868 0.61 -0.8
1,929,622 - ECD_01868 0.61 -0.3
1,930,133 + -0.5
1,930,341 + +2.1
1,930,418 + ECD_01869 0.14 +0.2
1,930,429 - ECD_01869 0.15 +0.1
1,930,479 - ECD_01869 0.20 +0.1
1,930,836 - ECD_01869 0.56 -0.2
1,930,836 - ECD_01869 0.56 -0.7
1,930,837 + ECD_01869 0.56 +0.9
1,931,010 - ECD_01869 0.74 +0.9

Or see this region's nucleotide sequence