Strain Fitness in Escherichia coli BL21 around ECD_01762

Experiment: Control_TnJ

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01760 and ECD_01761 are separated by 54 nucleotidesECD_01761 and ECD_01762 are separated by 21 nucleotidesECD_01762 and ECD_01763 are separated by 182 nucleotides ECD_01760: ECD_01760 - putative MFS transporter, inner membrane protein, at 1,820,050 to 1,821,231 _01760 ECD_01761: ECD_01761 - DUF488 family protein, at 1,821,286 to 1,821,633 _01761 ECD_01762: ECD_01762 - DUF333 family outer membrane lipoprotein, at 1,821,655 to 1,821,909 _01762 ECD_01763: ECD_01763 - diguanylate cyclase, at 1,822,092 to 1,823,117 _01763 Position (kb) 1821 1822Strain fitness (log2 ratio) -1 0 1 2at 1820.659 kb on - strand, within ECD_01760at 1821.118 kb on - strandat 1821.625 kb on - strandat 1822.001 kb on + strandat 1822.034 kb on - strandat 1822.034 kb on - strandat 1822.034 kb on - strandat 1822.051 kb on + strandat 1822.247 kb on + strand, within ECD_01763at 1822.248 kb on - strand, within ECD_01763

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnJ
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1,820,659 - ECD_01760 0.52 -0.5
1,821,118 - +2.0
1,821,625 - +0.3
1,822,001 + +0.3
1,822,034 - +0.6
1,822,034 - -1.2
1,822,034 - -1.7
1,822,051 + -0.1
1,822,247 + ECD_01763 0.15 +2.5
1,822,248 - ECD_01763 0.15 +1.0

Or see this region's nucleotide sequence