Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01485 and ECD_01486 are separated by 24 nucleotides ECD_01486 and ECD_01487 are separated by 120 nucleotides ECD_01487 and ECD_01488 overlap by 11 nucleotides ECD_01488 and ECD_01489 are separated by 219 nucleotides
ECD_01485: ECD_01485 - arabinose efflux transporter, arabinose-inducible, at 1,565,601 to 1,566,791
_01485
ECD_01486: ECD_01486 - UPF0056 family inner membrane protein, at 1,566,816 to 1,567,481
_01486
ECD_01487: ECD_01487 - phage N15 gp48-like protein, at 1,567,602 to 1,567,886
_01487
ECD_01488: ECD_01488 - putative phage protein, at 1,567,876 to 1,568,196
_01488
ECD_01489: ECD_01489 - transcriptional repressor of multiple antibiotic resistance, at 1,568,416 to 1,568,850
_01489
Position (kb)
1566
1567
1568 Strain fitness (log2 ratio)
-1
0
1 at 1566.291 kb on + strand, within ECD_01485 at 1566.939 kb on - strand, within ECD_01486 at 1567.065 kb on - strand, within ECD_01486 at 1567.334 kb on - strand, within ECD_01486 at 1567.429 kb on - strand at 1567.510 kb on + strand at 1567.620 kb on - strand at 1567.620 kb on - strand at 1567.620 kb on - strand at 1567.620 kb on - strand at 1567.646 kb on - strand, within ECD_01487 at 1567.654 kb on - strand, within ECD_01487 at 1567.654 kb on - strand, within ECD_01487 at 1567.654 kb on - strand, within ECD_01487 at 1567.662 kb on - strand, within ECD_01487 at 1567.678 kb on - strand, within ECD_01487 at 1567.678 kb on - strand, within ECD_01487 at 1567.957 kb on - strand, within ECD_01488 at 1567.967 kb on - strand, within ECD_01488 at 1568.197 kb on - strand at 1568.291 kb on - strand at 1568.412 kb on + strand at 1568.412 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 1,566,291 + ECD_01485 0.58 +1.2 1,566,939 - ECD_01486 0.18 +0.7 1,567,065 - ECD_01486 0.37 +1.6 1,567,334 - ECD_01486 0.78 +0.1 1,567,429 - +0.2 1,567,510 + -0.6 1,567,620 - +0.2 1,567,620 - -0.0 1,567,620 - -0.8 1,567,620 - -1.2 1,567,646 - ECD_01487 0.15 -0.3 1,567,654 - ECD_01487 0.18 +0.0 1,567,654 - ECD_01487 0.18 +0.6 1,567,654 - ECD_01487 0.18 -1.1 1,567,662 - ECD_01487 0.21 -0.1 1,567,678 - ECD_01487 0.27 -0.8 1,567,678 - ECD_01487 0.27 -1.2 1,567,957 - ECD_01488 0.25 +1.2 1,567,967 - ECD_01488 0.28 -0.4 1,568,197 - +0.7 1,568,291 - +0.9 1,568,412 + -0.6 1,568,412 + -1.1
Or see this region's nucleotide sequence