Strain Fitness in Escherichia coli BL21 around ECD_01486

Experiment: Control_TnJ

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01485 and ECD_01486 are separated by 24 nucleotidesECD_01486 and ECD_01487 are separated by 120 nucleotidesECD_01487 and ECD_01488 overlap by 11 nucleotidesECD_01488 and ECD_01489 are separated by 219 nucleotides ECD_01485: ECD_01485 - arabinose efflux transporter, arabinose-inducible, at 1,565,601 to 1,566,791 _01485 ECD_01486: ECD_01486 - UPF0056 family inner membrane protein, at 1,566,816 to 1,567,481 _01486 ECD_01487: ECD_01487 - phage N15 gp48-like protein, at 1,567,602 to 1,567,886 _01487 ECD_01488: ECD_01488 - putative phage protein, at 1,567,876 to 1,568,196 _01488 ECD_01489: ECD_01489 - transcriptional repressor of multiple antibiotic resistance, at 1,568,416 to 1,568,850 _01489 Position (kb) 1566 1567 1568Strain fitness (log2 ratio) -1 0 1at 1566.291 kb on + strand, within ECD_01485at 1566.939 kb on - strand, within ECD_01486at 1567.065 kb on - strand, within ECD_01486at 1567.334 kb on - strand, within ECD_01486at 1567.429 kb on - strandat 1567.510 kb on + strandat 1567.620 kb on - strandat 1567.620 kb on - strandat 1567.620 kb on - strandat 1567.620 kb on - strandat 1567.646 kb on - strand, within ECD_01487at 1567.654 kb on - strand, within ECD_01487at 1567.654 kb on - strand, within ECD_01487at 1567.654 kb on - strand, within ECD_01487at 1567.662 kb on - strand, within ECD_01487at 1567.678 kb on - strand, within ECD_01487at 1567.678 kb on - strand, within ECD_01487at 1567.957 kb on - strand, within ECD_01488at 1567.967 kb on - strand, within ECD_01488at 1568.197 kb on - strandat 1568.291 kb on - strandat 1568.412 kb on + strandat 1568.412 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnJ
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1,566,291 + ECD_01485 0.58 +1.2
1,566,939 - ECD_01486 0.18 +0.7
1,567,065 - ECD_01486 0.37 +1.6
1,567,334 - ECD_01486 0.78 +0.1
1,567,429 - +0.2
1,567,510 + -0.6
1,567,620 - +0.2
1,567,620 - -0.0
1,567,620 - -0.8
1,567,620 - -1.2
1,567,646 - ECD_01487 0.15 -0.3
1,567,654 - ECD_01487 0.18 +0.0
1,567,654 - ECD_01487 0.18 +0.6
1,567,654 - ECD_01487 0.18 -1.1
1,567,662 - ECD_01487 0.21 -0.1
1,567,678 - ECD_01487 0.27 -0.8
1,567,678 - ECD_01487 0.27 -1.2
1,567,957 - ECD_01488 0.25 +1.2
1,567,967 - ECD_01488 0.28 -0.4
1,568,197 - +0.7
1,568,291 - +0.9
1,568,412 + -0.6
1,568,412 + -1.1

Or see this region's nucleotide sequence