Strain Fitness in Escherichia coli BL21 around ECD_01093

Experiment: Control_TnJ

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01091 and ECD_01092 are separated by 119 nucleotidesECD_01092 and ECD_01093 are separated by 2 nucleotidesECD_01093 and ECD_01094 overlap by 11 nucleotidesECD_01094 and ECD_01095 overlap by 4 nucleotides ECD_01091: ECD_01091 - 3-oxoacyl-[acyl-carrier-protein] synthase II, at 1,154,506 to 1,155,747 _01091 ECD_01092: ECD_01092 - 4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex, at 1,155,867 to 1,156,676 _01092 ECD_01093: ECD_01093 - septation protein, ampicillin sensitivity, at 1,156,679 to 1,157,701 _01093 ECD_01094: ECD_01094 - thymidylate kinase, at 1,157,691 to 1,158,332 _01094 ECD_01095: ECD_01095 - DNA polymerase III, delta prime subunit, at 1,158,329 to 1,159,333 _01095 Position (kb) 1156 1157 1158Strain fitness (log2 ratio) -1 0 1 2at 1155.745 kb on + strandat 1155.887 kb on + strandat 1155.888 kb on - strandat 1156.423 kb on + strand, within ECD_01092at 1156.636 kb on + strandat 1156.800 kb on + strand, within ECD_01093at 1156.924 kb on + strand, within ECD_01093at 1157.022 kb on + strand, within ECD_01093at 1157.045 kb on + strand, within ECD_01093at 1157.180 kb on + strand, within ECD_01093at 1157.180 kb on + strand, within ECD_01093at 1157.489 kb on + strand, within ECD_01093at 1157.491 kb on + strand, within ECD_01093at 1157.498 kb on + strand, within ECD_01093at 1157.500 kb on + strand, within ECD_01093at 1157.500 kb on + strand, within ECD_01093

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnJ
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1,155,745 + +0.2
1,155,887 + +1.0
1,155,888 - +1.9
1,156,423 + ECD_01092 0.69 -0.1
1,156,636 + -0.7
1,156,800 + ECD_01093 0.12 +0.4
1,156,924 + ECD_01093 0.24 +0.9
1,157,022 + ECD_01093 0.34 +0.7
1,157,045 + ECD_01093 0.36 +1.3
1,157,180 + ECD_01093 0.49 -0.5
1,157,180 + ECD_01093 0.49 -1.7
1,157,489 + ECD_01093 0.79 +0.5
1,157,491 + ECD_01093 0.79 -0.3
1,157,498 + ECD_01093 0.80 -0.3
1,157,500 + ECD_01093 0.80 +1.2
1,157,500 + ECD_01093 0.80 +0.3

Or see this region's nucleotide sequence