Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01091 and ECD_01092 are separated by 119 nucleotides ECD_01092 and ECD_01093 are separated by 2 nucleotides ECD_01093 and ECD_01094 overlap by 11 nucleotides ECD_01094 and ECD_01095 overlap by 4 nucleotides
ECD_01091: ECD_01091 - 3-oxoacyl-[acyl-carrier-protein] synthase II, at 1,154,506 to 1,155,747
_01091
ECD_01092: ECD_01092 - 4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex, at 1,155,867 to 1,156,676
_01092
ECD_01093: ECD_01093 - septation protein, ampicillin sensitivity, at 1,156,679 to 1,157,701
_01093
ECD_01094: ECD_01094 - thymidylate kinase, at 1,157,691 to 1,158,332
_01094
ECD_01095: ECD_01095 - DNA polymerase III, delta prime subunit, at 1,158,329 to 1,159,333
_01095
Position (kb)
1156
1157
1158 Strain fitness (log2 ratio)
-1
0
1
2 at 1155.745 kb on + strand at 1155.887 kb on + strand at 1155.888 kb on - strand at 1156.423 kb on + strand, within ECD_01092 at 1156.636 kb on + strand at 1156.800 kb on + strand, within ECD_01093 at 1156.924 kb on + strand, within ECD_01093 at 1157.022 kb on + strand, within ECD_01093 at 1157.045 kb on + strand, within ECD_01093 at 1157.180 kb on + strand, within ECD_01093 at 1157.180 kb on + strand, within ECD_01093 at 1157.489 kb on + strand, within ECD_01093 at 1157.491 kb on + strand, within ECD_01093 at 1157.498 kb on + strand, within ECD_01093 at 1157.500 kb on + strand, within ECD_01093 at 1157.500 kb on + strand, within ECD_01093
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 1,155,745 + +0.2 1,155,887 + +1.0 1,155,888 - +1.9 1,156,423 + ECD_01092 0.69 -0.1 1,156,636 + -0.7 1,156,800 + ECD_01093 0.12 +0.4 1,156,924 + ECD_01093 0.24 +0.9 1,157,022 + ECD_01093 0.34 +0.7 1,157,045 + ECD_01093 0.36 +1.3 1,157,180 + ECD_01093 0.49 -0.5 1,157,180 + ECD_01093 0.49 -1.7 1,157,489 + ECD_01093 0.79 +0.5 1,157,491 + ECD_01093 0.79 -0.3 1,157,498 + ECD_01093 0.80 -0.3 1,157,500 + ECD_01093 0.80 +1.2 1,157,500 + ECD_01093 0.80 +0.3
Or see this region's nucleotide sequence