Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01059 and ECD_01060 are separated by 133 nucleotides ECD_01060 and ECD_01061 are separated by 63 nucleotides ECD_01061 and ECD_01062 are separated by 235 nucleotides ECD_01062 and ECD_01063 are separated by 10 nucleotides
ECD_01059: ECD_01059 - lipoprotein, DUF1439 family, at 1,125,283 to 1,125,843
_01059
ECD_01060: ECD_01060 - glutaredoxin 2 (Grx2), at 1,125,977 to 1,126,624
_01060
ECD_01061: ECD_01061 - multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin, at 1,126,688 to 1,127,896
_01061
ECD_01062: ECD_01062 - ribosomal-protein-S5-alanine N-acetyltransferase, at 1,128,132 to 1,128,716
_01062
ECD_01063: ECD_01063 - UPF0502 family protein, at 1,128,727 to 1,129,374
_01063
Position (kb)
1126
1127
1128 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1125.771 kb on - strand, within ECD_01059 at 1125.787 kb on - strand, within ECD_01059 at 1126.101 kb on - strand, within ECD_01060 at 1126.186 kb on + strand, within ECD_01060 at 1126.423 kb on - strand, within ECD_01060 at 1126.452 kb on + strand, within ECD_01060 at 1126.614 kb on + strand at 1126.614 kb on + strand at 1126.614 kb on + strand at 1126.614 kb on + strand at 1126.849 kb on - strand, within ECD_01061 at 1127.151 kb on + strand, within ECD_01061 at 1127.235 kb on + strand, within ECD_01061 at 1127.236 kb on - strand, within ECD_01061 at 1127.259 kb on + strand, within ECD_01061 at 1128.079 kb on + strand at 1128.079 kb on + strand at 1128.081 kb on + strand at 1128.084 kb on + strand at 1128.085 kb on - strand at 1128.122 kb on + strand at 1128.126 kb on + strand at 1128.341 kb on + strand, within ECD_01062 at 1128.361 kb on - strand, within ECD_01062 at 1128.524 kb on + strand, within ECD_01062 at 1128.525 kb on - strand, within ECD_01062 at 1128.542 kb on + strand, within ECD_01062 at 1128.542 kb on + strand, within ECD_01062 at 1128.543 kb on - strand, within ECD_01062 at 1128.555 kb on - strand, within ECD_01062 at 1128.564 kb on + strand, within ECD_01062 at 1128.564 kb on + strand, within ECD_01062 at 1128.564 kb on + strand, within ECD_01062 at 1128.564 kb on + strand, within ECD_01062 at 1128.564 kb on + strand, within ECD_01062 at 1128.639 kb on + strand, within ECD_01062
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 1,125,771 - ECD_01059 0.87 +0.5 1,125,787 - ECD_01059 0.90 +0.0 1,126,101 - ECD_01060 0.19 -0.1 1,126,186 + ECD_01060 0.32 +0.1 1,126,423 - ECD_01060 0.69 -0.2 1,126,452 + ECD_01060 0.73 -1.0 1,126,614 + +0.3 1,126,614 + +0.2 1,126,614 + +0.7 1,126,614 + +1.8 1,126,849 - ECD_01061 0.13 +1.8 1,127,151 + ECD_01061 0.38 +0.3 1,127,235 + ECD_01061 0.45 -1.5 1,127,236 - ECD_01061 0.45 +1.1 1,127,259 + ECD_01061 0.47 +0.6 1,128,079 + -1.1 1,128,079 + -0.3 1,128,081 + -1.4 1,128,084 + -0.7 1,128,085 - -0.1 1,128,122 + +0.6 1,128,126 + -0.9 1,128,341 + ECD_01062 0.36 -0.4 1,128,361 - ECD_01062 0.39 -0.5 1,128,524 + ECD_01062 0.67 +1.1 1,128,525 - ECD_01062 0.67 -2.6 1,128,542 + ECD_01062 0.70 +0.1 1,128,542 + ECD_01062 0.70 -0.6 1,128,543 - ECD_01062 0.70 -0.7 1,128,555 - ECD_01062 0.72 +0.1 1,128,564 + ECD_01062 0.74 -0.5 1,128,564 + ECD_01062 0.74 -0.4 1,128,564 + ECD_01062 0.74 -0.7 1,128,564 + ECD_01062 0.74 -1.8 1,128,564 + ECD_01062 0.74 -0.7 1,128,639 + ECD_01062 0.87 -0.8
Or see this region's nucleotide sequence