Strain Fitness in Escherichia coli BL21 around ECD_01061

Experiment: Control_TnJ

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01059 and ECD_01060 are separated by 133 nucleotidesECD_01060 and ECD_01061 are separated by 63 nucleotidesECD_01061 and ECD_01062 are separated by 235 nucleotidesECD_01062 and ECD_01063 are separated by 10 nucleotides ECD_01059: ECD_01059 - lipoprotein, DUF1439 family, at 1,125,283 to 1,125,843 _01059 ECD_01060: ECD_01060 - glutaredoxin 2 (Grx2), at 1,125,977 to 1,126,624 _01060 ECD_01061: ECD_01061 - multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin, at 1,126,688 to 1,127,896 _01061 ECD_01062: ECD_01062 - ribosomal-protein-S5-alanine N-acetyltransferase, at 1,128,132 to 1,128,716 _01062 ECD_01063: ECD_01063 - UPF0502 family protein, at 1,128,727 to 1,129,374 _01063 Position (kb) 1126 1127 1128Strain fitness (log2 ratio) -2 -1 0 1 2at 1125.771 kb on - strand, within ECD_01059at 1125.787 kb on - strand, within ECD_01059at 1126.101 kb on - strand, within ECD_01060at 1126.186 kb on + strand, within ECD_01060at 1126.423 kb on - strand, within ECD_01060at 1126.452 kb on + strand, within ECD_01060at 1126.614 kb on + strandat 1126.614 kb on + strandat 1126.614 kb on + strandat 1126.614 kb on + strandat 1126.849 kb on - strand, within ECD_01061at 1127.151 kb on + strand, within ECD_01061at 1127.235 kb on + strand, within ECD_01061at 1127.236 kb on - strand, within ECD_01061at 1127.259 kb on + strand, within ECD_01061at 1128.079 kb on + strandat 1128.079 kb on + strandat 1128.081 kb on + strandat 1128.084 kb on + strandat 1128.085 kb on - strandat 1128.122 kb on + strandat 1128.126 kb on + strandat 1128.341 kb on + strand, within ECD_01062at 1128.361 kb on - strand, within ECD_01062at 1128.524 kb on + strand, within ECD_01062at 1128.525 kb on - strand, within ECD_01062at 1128.542 kb on + strand, within ECD_01062at 1128.542 kb on + strand, within ECD_01062at 1128.543 kb on - strand, within ECD_01062at 1128.555 kb on - strand, within ECD_01062at 1128.564 kb on + strand, within ECD_01062at 1128.564 kb on + strand, within ECD_01062at 1128.564 kb on + strand, within ECD_01062at 1128.564 kb on + strand, within ECD_01062at 1128.564 kb on + strand, within ECD_01062at 1128.639 kb on + strand, within ECD_01062

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_TnJ
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1,125,771 - ECD_01059 0.87 +0.5
1,125,787 - ECD_01059 0.90 +0.0
1,126,101 - ECD_01060 0.19 -0.1
1,126,186 + ECD_01060 0.32 +0.1
1,126,423 - ECD_01060 0.69 -0.2
1,126,452 + ECD_01060 0.73 -1.0
1,126,614 + +0.3
1,126,614 + +0.2
1,126,614 + +0.7
1,126,614 + +1.8
1,126,849 - ECD_01061 0.13 +1.8
1,127,151 + ECD_01061 0.38 +0.3
1,127,235 + ECD_01061 0.45 -1.5
1,127,236 - ECD_01061 0.45 +1.1
1,127,259 + ECD_01061 0.47 +0.6
1,128,079 + -1.1
1,128,079 + -0.3
1,128,081 + -1.4
1,128,084 + -0.7
1,128,085 - -0.1
1,128,122 + +0.6
1,128,126 + -0.9
1,128,341 + ECD_01062 0.36 -0.4
1,128,361 - ECD_01062 0.39 -0.5
1,128,524 + ECD_01062 0.67 +1.1
1,128,525 - ECD_01062 0.67 -2.6
1,128,542 + ECD_01062 0.70 +0.1
1,128,542 + ECD_01062 0.70 -0.6
1,128,543 - ECD_01062 0.70 -0.7
1,128,555 - ECD_01062 0.72 +0.1
1,128,564 + ECD_01062 0.74 -0.5
1,128,564 + ECD_01062 0.74 -0.4
1,128,564 + ECD_01062 0.74 -0.7
1,128,564 + ECD_01062 0.74 -1.8
1,128,564 + ECD_01062 0.74 -0.7
1,128,639 + ECD_01062 0.87 -0.8

Or see this region's nucleotide sequence