Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00804 and ECD_00805 overlap by 4 nucleotides ECD_00805 and ECD_00806 are separated by 246 nucleotides ECD_00806 and ECD_00807 are separated by 46 nucleotides ECD_00807 and ECD_00808 are separated by 57 nucleotides
ECD_00804: ECD_00804 - soluble aldose sugar dehydrogenase, at 862,661 to 863,776
_00804
ECD_00805: ECD_00805 - glutathione S-transferase, at 863,773 to 864,399
_00805
ECD_00806: ECD_00806 - D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a, at 864,646 to 865,848
_00806
ECD_00807: ECD_00807 - deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx, at 865,895 to 866,653
_00807
ECD_00808: ECD_00808 - undecaprenyl pyrophosphate phosphatase, at 866,711 to 867,307
_00808
Position (kb) 864
865
866 Strain fitness (log2 ratio) -1
0
1
2 at 863.718 kb on + strand at 863.720 kb on + strand at 863.752 kb on - strand at 863.761 kb on + strand at 863.774 kb on + strand at 864.655 kb on + strand at 864.795 kb on + strand, within ECD_00806 at 864.900 kb on + strand, within ECD_00806 at 865.056 kb on + strand, within ECD_00806 at 865.072 kb on + strand, within ECD_00806 at 865.407 kb on + strand, within ECD_00806 at 865.646 kb on - strand, within ECD_00806 at 865.647 kb on + strand, within ECD_00806 at 865.647 kb on + strand, within ECD_00806 at 865.647 kb on + strand, within ECD_00806 at 865.647 kb on + strand, within ECD_00806 at 865.647 kb on + strand, within ECD_00806 at 865.647 kb on + strand, within ECD_00806 at 865.889 kb on - strand at 865.889 kb on - strand at 865.896 kb on + strand at 865.900 kb on - strand at 865.900 kb on - strand at 865.938 kb on + strand at 865.939 kb on - strand at 865.939 kb on - strand at 865.939 kb on - strand at 865.939 kb on - strand at 866.451 kb on - strand, within ECD_00807 at 866.594 kb on - strand at 866.671 kb on - strand at 866.691 kb on - strand at 866.691 kb on - strand at 866.691 kb on - strand at 866.789 kb on - strand, within ECD_00808 at 866.822 kb on - strand, within ECD_00808 at 866.837 kb on - strand, within ECD_00808
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 863,718 + +1.1 863,720 + -0.1 863,752 - +0.4 863,761 + +0.7 863,774 + -0.6 864,655 + -0.0 864,795 + ECD_00806 0.12 +0.5 864,900 + ECD_00806 0.21 +0.1 865,056 + ECD_00806 0.34 +0.2 865,072 + ECD_00806 0.35 +0.1 865,407 + ECD_00806 0.63 +0.2 865,646 - ECD_00806 0.83 +0.4 865,647 + ECD_00806 0.83 -0.2 865,647 + ECD_00806 0.83 +0.8 865,647 + ECD_00806 0.83 +1.8 865,647 + ECD_00806 0.83 -0.5 865,647 + ECD_00806 0.83 +1.4 865,647 + ECD_00806 0.83 +0.4 865,889 - +0.4 865,889 - +0.0 865,896 + +1.6 865,900 - +0.8 865,900 - +1.0 865,938 + +0.1 865,939 - -0.1 865,939 - +1.8 865,939 - -0.0 865,939 - -0.2 866,451 - ECD_00807 0.73 +1.3 866,594 - +0.3 866,671 - -1.4 866,691 - +0.0 866,691 - -0.2 866,691 - -0.4 866,789 - ECD_00808 0.13 -0.7 866,822 - ECD_00808 0.19 +0.1 866,837 - ECD_00808 0.21 -0.2
Or see this region's nucleotide sequence