Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00602 and ECD_00603 are separated by 10 nucleotides ECD_00603 and ECD_00604 are separated by 2 nucleotides
ECD_00602: ECD_00602 - septal ring protein, suppressor of prc, minor lipoprotein, at 624,465 to 625,553
_00602
ECD_00603: ECD_00603 - cell wall shape-determining protein, at 625,564 to 626,676
_00603
ECD_00604: ECD_00604 - penicillin-binding protein 2, transpeptidase involved in peptidoglycan synthesis, at 626,679 to 628,580
_00604
Position (kb) 625
626
627 Strain fitness (log2 ratio) -1
0
1 at 624.635 kb on - strand, within ECD_00602 at 624.761 kb on + strand, within ECD_00602 at 624.928 kb on - strand, within ECD_00602 at 625.002 kb on - strand, within ECD_00602 at 625.002 kb on - strand, within ECD_00602 at 625.002 kb on - strand, within ECD_00602 at 625.002 kb on - strand, within ECD_00602 at 625.011 kb on - strand, within ECD_00602 at 625.086 kb on - strand, within ECD_00602 at 625.372 kb on + strand, within ECD_00602 at 625.373 kb on - strand, within ECD_00602 at 625.435 kb on - strand, within ECD_00602 at 625.446 kb on - strand at 625.465 kb on - strand at 625.500 kb on - strand at 625.500 kb on - strand at 626.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 624,635 - ECD_00602 0.16 +0.8 624,761 + ECD_00602 0.27 -0.0 624,928 - ECD_00602 0.43 +1.0 625,002 - ECD_00602 0.49 +0.4 625,002 - ECD_00602 0.49 +0.7 625,002 - ECD_00602 0.49 -0.6 625,002 - ECD_00602 0.49 -0.6 625,011 - ECD_00602 0.50 +0.7 625,086 - ECD_00602 0.57 -0.4 625,372 + ECD_00602 0.83 +1.0 625,373 - ECD_00602 0.83 -0.1 625,435 - ECD_00602 0.89 -1.3 625,446 - +1.7 625,465 - +0.0 625,500 - -0.2 625,500 - -1.0 626,748 - -1.7
Or see this region's nucleotide sequence