Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00580 and ECD_00581 are separated by 50 nucleotides ECD_00581 and ECD_00582 overlap by 26 nucleotides ECD_00582 and ECD_00583 are separated by 3 nucleotides
ECD_00580: ECD_00580 - citrate/succinate antiporter; citrate carrier, at 604,947 to 606,410
_00580
ECD_00581: ECD_00581 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 606,461 to 607,339
_00581
ECD_00582: ECD_00582 - apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 607,314 to 607,865
_00582
ECD_00583: ECD_00583 - citrate lyase, citrate-ACP transferase (alpha) subunit, at 607,869 to 609,401
_00583
Position (kb) 607
608 Strain fitness (log2 ratio) -1
0
1
2 at 606.379 kb on - strand at 606.379 kb on - strand at 606.388 kb on - strand at 606.388 kb on - strand at 606.390 kb on - strand at 606.686 kb on + strand, within ECD_00581 at 606.686 kb on + strand, within ECD_00581 at 606.722 kb on + strand, within ECD_00581 at 606.723 kb on - strand, within ECD_00581 at 606.747 kb on + strand, within ECD_00581 at 606.747 kb on + strand, within ECD_00581 at 606.748 kb on - strand, within ECD_00581 at 606.829 kb on - strand, within ECD_00581 at 606.860 kb on - strand, within ECD_00581 at 606.984 kb on - strand, within ECD_00581 at 607.003 kb on + strand, within ECD_00581 at 607.036 kb on + strand, within ECD_00581 at 607.036 kb on + strand, within ECD_00581 at 607.037 kb on - strand, within ECD_00581 at 607.184 kb on - strand, within ECD_00581 at 607.184 kb on - strand, within ECD_00581 at 607.453 kb on + strand, within ECD_00582 at 607.526 kb on + strand, within ECD_00582 at 607.526 kb on + strand, within ECD_00582 at 607.527 kb on - strand, within ECD_00582 at 608.127 kb on + strand, within ECD_00583 at 608.127 kb on + strand, within ECD_00583 at 608.150 kb on + strand, within ECD_00583 at 608.151 kb on - strand, within ECD_00583 at 608.346 kb on - strand, within ECD_00583 at 608.346 kb on - strand, within ECD_00583 at 608.350 kb on + strand, within ECD_00583 at 608.642 kb on + strand, within ECD_00583
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 606,379 - -0.2 606,379 - +1.4 606,388 - +0.0 606,388 - +0.4 606,390 - +0.4 606,686 + ECD_00581 0.26 -0.2 606,686 + ECD_00581 0.26 -0.3 606,722 + ECD_00581 0.30 -1.2 606,723 - ECD_00581 0.30 +1.2 606,747 + ECD_00581 0.33 -0.3 606,747 + ECD_00581 0.33 +0.5 606,748 - ECD_00581 0.33 -0.5 606,829 - ECD_00581 0.42 -1.4 606,860 - ECD_00581 0.45 -0.6 606,984 - ECD_00581 0.59 -0.2 607,003 + ECD_00581 0.62 +0.1 607,036 + ECD_00581 0.65 -0.2 607,036 + ECD_00581 0.65 -0.4 607,037 - ECD_00581 0.66 +0.4 607,184 - ECD_00581 0.82 +2.1 607,184 - ECD_00581 0.82 -1.6 607,453 + ECD_00582 0.25 -0.4 607,526 + ECD_00582 0.38 +1.0 607,526 + ECD_00582 0.38 +0.6 607,527 - ECD_00582 0.39 -0.2 608,127 + ECD_00583 0.17 -0.4 608,127 + ECD_00583 0.17 -0.6 608,150 + ECD_00583 0.18 -0.1 608,151 - ECD_00583 0.18 -1.1 608,346 - ECD_00583 0.31 +0.7 608,346 - ECD_00583 0.31 -0.7 608,350 + ECD_00583 0.31 -0.3 608,642 + ECD_00583 0.50 -0.0
Or see this region's nucleotide sequence