Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00342 and ECD_00343 are separated by 124 nucleotides ECD_00343 and ECD_00344 are separated by 244 nucleotides
ECD_00342: ECD_00342 - nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function, at 374,510 to 375,421
_00342
ECD_00343: ECD_00343 - manno(fructo)kinase, at 375,546 to 376,454
_00343
ECD_00344: ECD_00344 - L-arabinose-inducible putative transporter, MFS family, at 376,699 to 377,883
_00344
Position (kb)
375
376
377 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 374.873 kb on - strand, within ECD_00342 at 374.931 kb on - strand, within ECD_00342 at 374.957 kb on - strand, within ECD_00342 at 374.975 kb on - strand, within ECD_00342 at 375.011 kb on - strand, within ECD_00342 at 375.011 kb on - strand, within ECD_00342 at 375.131 kb on - strand, within ECD_00342 at 375.181 kb on + strand, within ECD_00342 at 375.226 kb on + strand, within ECD_00342 at 375.326 kb on - strand, within ECD_00342 at 375.326 kb on - strand, within ECD_00342 at 375.424 kb on + strand at 375.510 kb on + strand at 375.553 kb on + strand at 375.553 kb on + strand at 375.554 kb on - strand at 375.554 kb on - strand at 375.619 kb on - strand at 375.725 kb on - strand, within ECD_00343 at 375.728 kb on + strand, within ECD_00343 at 375.729 kb on - strand, within ECD_00343 at 375.821 kb on - strand, within ECD_00343 at 375.863 kb on + strand, within ECD_00343 at 375.889 kb on + strand, within ECD_00343 at 375.890 kb on - strand, within ECD_00343 at 375.890 kb on - strand, within ECD_00343 at 375.919 kb on + strand, within ECD_00343 at 376.074 kb on + strand, within ECD_00343 at 376.075 kb on - strand, within ECD_00343 at 376.094 kb on + strand, within ECD_00343 at 376.107 kb on - strand, within ECD_00343 at 376.315 kb on + strand, within ECD_00343 at 376.325 kb on - strand, within ECD_00343 at 376.453 kb on - strand at 376.453 kb on - strand at 376.570 kb on - strand at 376.674 kb on - strand at 376.678 kb on - strand at 376.693 kb on + strand at 376.693 kb on + strand at 376.695 kb on + strand at 376.700 kb on + strand at 376.752 kb on - strand at 376.817 kb on + strand at 376.817 kb on + strand at 376.821 kb on + strand, within ECD_00344 at 376.822 kb on - strand, within ECD_00344 at 376.822 kb on - strand, within ECD_00344 at 376.823 kb on + strand, within ECD_00344 at 376.849 kb on - strand, within ECD_00344 at 376.849 kb on - strand, within ECD_00344 at 376.860 kb on - strand, within ECD_00344 at 376.860 kb on - strand, within ECD_00344 at 376.913 kb on - strand, within ECD_00344 at 376.949 kb on - strand, within ECD_00344 at 377.156 kb on - strand, within ECD_00344 at 377.156 kb on - strand, within ECD_00344 at 377.156 kb on - strand, within ECD_00344 at 377.167 kb on - strand, within ECD_00344 at 377.210 kb on + strand, within ECD_00344 at 377.211 kb on - strand, within ECD_00344 at 377.211 kb on - strand, within ECD_00344 at 377.211 kb on - strand, within ECD_00344 at 377.211 kb on - strand, within ECD_00344 at 377.211 kb on - strand, within ECD_00344 at 377.211 kb on - strand, within ECD_00344 at 377.223 kb on - strand, within ECD_00344 at 377.223 kb on - strand, within ECD_00344 at 377.383 kb on - strand, within ECD_00344
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 374,873 - ECD_00342 0.40 +0.5 374,931 - ECD_00342 0.46 +0.5 374,957 - ECD_00342 0.49 +0.5 374,975 - ECD_00342 0.51 -1.2 375,011 - ECD_00342 0.55 -0.1 375,011 - ECD_00342 0.55 +0.6 375,131 - ECD_00342 0.68 -1.3 375,181 + ECD_00342 0.74 +1.1 375,226 + ECD_00342 0.79 -0.7 375,326 - ECD_00342 0.89 +0.5 375,326 - ECD_00342 0.89 -0.7 375,424 + +0.6 375,510 + +0.4 375,553 + +0.6 375,553 + +0.5 375,554 - -0.4 375,554 - -1.3 375,619 - +0.4 375,725 - ECD_00343 0.20 -0.2 375,728 + ECD_00343 0.20 +0.2 375,729 - ECD_00343 0.20 -0.5 375,821 - ECD_00343 0.30 -0.1 375,863 + ECD_00343 0.35 -0.2 375,889 + ECD_00343 0.38 -1.8 375,890 - ECD_00343 0.38 +0.1 375,890 - ECD_00343 0.38 -1.0 375,919 + ECD_00343 0.41 -1.8 376,074 + ECD_00343 0.58 +0.7 376,075 - ECD_00343 0.58 +0.4 376,094 + ECD_00343 0.60 -0.1 376,107 - ECD_00343 0.62 -0.1 376,315 + ECD_00343 0.85 +0.2 376,325 - ECD_00343 0.86 -0.1 376,453 - +0.5 376,453 - +0.4 376,570 - +2.1 376,674 - +0.2 376,678 - -0.5 376,693 + +0.0 376,693 + +1.5 376,695 + +0.7 376,700 + -0.0 376,752 - -1.0 376,817 + +0.5 376,817 + +0.1 376,821 + ECD_00344 0.10 +0.9 376,822 - ECD_00344 0.10 -0.5 376,822 - ECD_00344 0.10 +0.0 376,823 + ECD_00344 0.10 +0.9 376,849 - ECD_00344 0.13 +0.4 376,849 - ECD_00344 0.13 +0.9 376,860 - ECD_00344 0.14 +1.9 376,860 - ECD_00344 0.14 +0.4 376,913 - ECD_00344 0.18 +0.2 376,949 - ECD_00344 0.21 -0.1 377,156 - ECD_00344 0.39 -0.8 377,156 - ECD_00344 0.39 -0.7 377,156 - ECD_00344 0.39 -0.4 377,167 - ECD_00344 0.39 -0.4 377,210 + ECD_00344 0.43 -0.3 377,211 - ECD_00344 0.43 +0.1 377,211 - ECD_00344 0.43 +0.3 377,211 - ECD_00344 0.43 +0.3 377,211 - ECD_00344 0.43 +0.7 377,211 - ECD_00344 0.43 +0.1 377,211 - ECD_00344 0.43 -0.9 377,223 - ECD_00344 0.44 -0.7 377,223 - ECD_00344 0.44 -1.5 377,383 - ECD_00344 0.58 +0.5
Or see this region's nucleotide sequence