Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00240 and ECD_t00005 are separated by 114 nucleotides ECD_t00005 and ECD_00241 are separated by 126 nucleotides ECD_00241 and ECD_00242 overlap by 22 nucleotides ECD_00242 and ECD_00243 are separated by 9 nucleotides
ECD_00240: ECD_00240 - gamma-glutamylphosphate reductase, at 265,998 to 267,251
_00240
ECD_t00005: ECD_t00005 - tRNA-Thr, at 267,366 to 267,441
_t00005
ECD_00241: ECD_00241 - putative transcriptional regulator, at 267,568 to 267,978
_00241
ECD_00242: ECD_00242 - moco insertion factor for PaoABC aldehyde oxidoreductase, at 267,957 to 268,913
_00242
ECD_00243: ECD_00243 - PaoABC aldehyde oxidoreductase, Moco-containing subunit, at 268,923 to 271,121
_00243
Position (kb) 267
268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 267.090 kb on + strand, within ECD_00240 at 267.113 kb on + strand, within ECD_00240 at 267.210 kb on + strand at 267.210 kb on + strand at 267.210 kb on + strand at 267.211 kb on - strand at 267.211 kb on - strand at 267.234 kb on + strand at 267.250 kb on - strand at 267.250 kb on - strand at 267.253 kb on + strand at 267.253 kb on + strand at 267.373 kb on + strand at 267.373 kb on + strand at 267.444 kb on + strand at 267.453 kb on + strand at 267.469 kb on - strand at 267.510 kb on + strand at 267.510 kb on + strand at 267.510 kb on + strand at 267.511 kb on - strand at 267.511 kb on - strand at 267.651 kb on - strand, within ECD_00241 at 267.657 kb on - strand, within ECD_00241 at 267.697 kb on + strand, within ECD_00241 at 267.718 kb on - strand, within ECD_00241 at 267.720 kb on - strand, within ECD_00241 at 267.720 kb on - strand, within ECD_00241 at 267.720 kb on - strand, within ECD_00241 at 267.805 kb on - strand, within ECD_00241 at 267.805 kb on - strand, within ECD_00241 at 267.903 kb on + strand, within ECD_00241 at 267.904 kb on - strand, within ECD_00241 at 267.910 kb on - strand, within ECD_00241 at 267.910 kb on - strand, within ECD_00241 at 267.910 kb on - strand, within ECD_00241 at 268.003 kb on - strand at 268.003 kb on - strand at 268.003 kb on - strand at 268.003 kb on - strand at 268.040 kb on + strand at 268.174 kb on + strand, within ECD_00242 at 268.301 kb on + strand, within ECD_00242 at 268.312 kb on + strand, within ECD_00242 at 269.003 kb on - strand at 269.003 kb on - strand at 269.229 kb on - strand, within ECD_00243 at 269.229 kb on - strand, within ECD_00243 at 269.229 kb on - strand, within ECD_00243 at 269.451 kb on + strand, within ECD_00243 at 269.451 kb on + strand, within ECD_00243 at 269.451 kb on + strand, within ECD_00243 at 269.451 kb on + strand, within ECD_00243 at 269.451 kb on + strand, within ECD_00243 at 269.452 kb on - strand, within ECD_00243 at 269.452 kb on - strand, within ECD_00243 at 269.583 kb on - strand, within ECD_00243 at 269.583 kb on - strand, within ECD_00243 at 269.705 kb on - strand, within ECD_00243 at 269.705 kb on - strand, within ECD_00243
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 267,090 + ECD_00240 0.87 +0.3 267,113 + ECD_00240 0.89 -0.6 267,210 + +0.3 267,210 + +0.7 267,210 + -0.1 267,211 - -0.4 267,211 - -0.7 267,234 + -0.0 267,250 - +0.4 267,250 - -1.2 267,253 + +1.1 267,253 + +1.3 267,373 + +0.8 267,373 + +0.6 267,444 + +0.6 267,453 + -1.4 267,469 - -3.1 267,510 + +0.8 267,510 + +0.4 267,510 + +0.3 267,511 - -0.7 267,511 - -0.2 267,651 - ECD_00241 0.20 +0.2 267,657 - ECD_00241 0.22 +0.3 267,697 + ECD_00241 0.31 +0.2 267,718 - ECD_00241 0.36 -2.2 267,720 - ECD_00241 0.37 -0.1 267,720 - ECD_00241 0.37 -0.1 267,720 - ECD_00241 0.37 -0.3 267,805 - ECD_00241 0.58 -0.9 267,805 - ECD_00241 0.58 +0.0 267,903 + ECD_00241 0.82 +0.9 267,904 - ECD_00241 0.82 +0.2 267,910 - ECD_00241 0.83 -0.5 267,910 - ECD_00241 0.83 +0.7 267,910 - ECD_00241 0.83 -0.5 268,003 - -0.0 268,003 - -0.8 268,003 - -0.4 268,003 - +0.8 268,040 + +0.3 268,174 + ECD_00242 0.23 -1.5 268,301 + ECD_00242 0.36 -0.7 268,312 + ECD_00242 0.37 -1.7 269,003 - +0.3 269,003 - -1.1 269,229 - ECD_00243 0.14 +1.3 269,229 - ECD_00243 0.14 -0.6 269,229 - ECD_00243 0.14 -0.2 269,451 + ECD_00243 0.24 -1.0 269,451 + ECD_00243 0.24 +0.4 269,451 + ECD_00243 0.24 +1.0 269,451 + ECD_00243 0.24 +0.1 269,451 + ECD_00243 0.24 +0.2 269,452 - ECD_00243 0.24 +0.2 269,452 - ECD_00243 0.24 +1.6 269,583 - ECD_00243 0.30 -1.2 269,583 - ECD_00243 0.30 +0.2 269,705 - ECD_00243 0.36 -0.8 269,705 - ECD_00243 0.36 +0.3
Or see this region's nucleotide sequence