Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00138 and ECD_00139 are separated by 34 nucleotides ECD_00139 and ECD_00140 are separated by 104 nucleotides
ECD_00138: ECD_00138 - putative outer membrane usher protein, at 155,671 to 158,271
_00138
ECD_00139: ECD_00139 - putative periplasmic pilin chaperone, at 158,306 to 159,046
_00139
ECD_00140: ECD_00140 - putative fimbrial-like adhesin protein, at 159,151 to 159,735
_00140
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1 at 157.509 kb on + strand, within ECD_00138 at 157.510 kb on - strand, within ECD_00138 at 157.511 kb on + strand, within ECD_00138 at 157.512 kb on - strand, within ECD_00138 at 157.562 kb on - strand, within ECD_00138 at 157.562 kb on - strand, within ECD_00138 at 157.575 kb on + strand, within ECD_00138 at 157.614 kb on - strand, within ECD_00138 at 157.728 kb on - strand, within ECD_00138 at 158.046 kb on + strand at 158.078 kb on + strand at 158.166 kb on - strand at 158.242 kb on - strand at 158.485 kb on + strand, within ECD_00139 at 158.496 kb on + strand, within ECD_00139 at 158.497 kb on - strand, within ECD_00139 at 158.499 kb on + strand, within ECD_00139 at 158.623 kb on + strand, within ECD_00139 at 158.828 kb on - strand, within ECD_00139 at 159.339 kb on + strand, within ECD_00140
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 157,509 + ECD_00138 0.71 -0.5 157,510 - ECD_00138 0.71 -0.2 157,511 + ECD_00138 0.71 -2.0 157,512 - ECD_00138 0.71 -0.4 157,562 - ECD_00138 0.73 -0.2 157,562 - ECD_00138 0.73 -1.3 157,575 + ECD_00138 0.73 -0.4 157,614 - ECD_00138 0.75 -0.0 157,728 - ECD_00138 0.79 +0.5 158,046 + -0.5 158,078 + +1.0 158,166 - -0.8 158,242 - +1.1 158,485 + ECD_00139 0.24 -0.7 158,496 + ECD_00139 0.26 +1.0 158,497 - ECD_00139 0.26 -0.0 158,499 + ECD_00139 0.26 +0.9 158,623 + ECD_00139 0.43 +0.9 158,828 - ECD_00139 0.70 +0.6 159,339 + ECD_00140 0.32 +0.6
Or see this region's nucleotide sequence