Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00135 and ECD_00136 are separated by 26 nucleotides ECD_00136 and ECD_00137 are separated by 14 nucleotides ECD_00137 and ECD_00138 are separated by 16 nucleotides
ECD_00135: ECD_00135 - putative fimbrial-like adhesin protein, at 153,845 to 154,441
_00135
ECD_00136: ECD_00136 - putative fimbrial-like adhesin protein, at 154,468 to 155,070
_00136
ECD_00137: ECD_00137 - putative fimbrial-like adhesin protein, at 155,085 to 155,654
_00137
ECD_00138: ECD_00138 - putative outer membrane usher protein, at 155,671 to 158,271
_00138
Position (kb) 155
156 Strain fitness (log2 ratio) -1
0
1 at 154.442 kb on - strand at 154.443 kb on + strand at 154.470 kb on - strand at 154.574 kb on + strand, within ECD_00136 at 154.636 kb on - strand, within ECD_00136 at 154.935 kb on + strand, within ECD_00136 at 155.241 kb on - strand, within ECD_00137 at 155.326 kb on - strand, within ECD_00137 at 155.326 kb on - strand, within ECD_00137 at 155.326 kb on - strand, within ECD_00137 at 155.331 kb on - strand, within ECD_00137 at 155.331 kb on - strand, within ECD_00137 at 155.336 kb on + strand, within ECD_00137 at 156.115 kb on - strand, within ECD_00138 at 156.126 kb on - strand, within ECD_00138 at 156.227 kb on - strand, within ECD_00138 at 156.227 kb on - strand, within ECD_00138 at 156.318 kb on - strand, within ECD_00138 at 156.339 kb on - strand, within ECD_00138 at 156.339 kb on - strand, within ECD_00138 at 156.370 kb on - strand, within ECD_00138 at 156.389 kb on + strand, within ECD_00138 at 156.389 kb on + strand, within ECD_00138 at 156.413 kb on + strand, within ECD_00138 at 156.424 kb on - strand, within ECD_00138 at 156.442 kb on - strand, within ECD_00138 at 156.442 kb on - strand, within ECD_00138 at 156.477 kb on + strand, within ECD_00138 at 156.515 kb on - strand, within ECD_00138 at 156.602 kb on + strand, within ECD_00138 at 156.642 kb on - strand, within ECD_00138 at 156.642 kb on - strand, within ECD_00138
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 154,442 - -1.4 154,443 + -0.2 154,470 - +0.1 154,574 + ECD_00136 0.18 -0.2 154,636 - ECD_00136 0.28 -1.4 154,935 + ECD_00136 0.77 +0.1 155,241 - ECD_00137 0.27 +1.1 155,326 - ECD_00137 0.42 +0.0 155,326 - ECD_00137 0.42 -1.2 155,326 - ECD_00137 0.42 +1.3 155,331 - ECD_00137 0.43 +0.2 155,331 - ECD_00137 0.43 +0.6 155,336 + ECD_00137 0.44 +0.4 156,115 - ECD_00138 0.17 +0.8 156,126 - ECD_00138 0.17 -0.6 156,227 - ECD_00138 0.21 -0.3 156,227 - ECD_00138 0.21 +1.6 156,318 - ECD_00138 0.25 +0.1 156,339 - ECD_00138 0.26 +0.8 156,339 - ECD_00138 0.26 -0.2 156,370 - ECD_00138 0.27 +0.2 156,389 + ECD_00138 0.28 -0.3 156,389 + ECD_00138 0.28 -0.3 156,413 + ECD_00138 0.29 -0.2 156,424 - ECD_00138 0.29 -0.0 156,442 - ECD_00138 0.30 +0.2 156,442 - ECD_00138 0.30 -0.6 156,477 + ECD_00138 0.31 +0.9 156,515 - ECD_00138 0.32 +1.0 156,602 + ECD_00138 0.36 -0.1 156,642 - ECD_00138 0.37 -0.5 156,642 - ECD_00138 0.37 +0.6
Or see this region's nucleotide sequence