Experiment: Ste04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03880 and ECD_03881 overlap by 4 nucleotides ECD_03881 and ECD_03882 overlap by 4 nucleotides
ECD_03880: ECD_03880 - sensory histidine kinase in two-component regulatory system with ZraR, at 4,109,972 to 4,111,348
_03880
ECD_03881: ECD_03881 - fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein, at 4,111,345 to 4,112,670
_03881
ECD_03882: ECD_03882 - phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase, at 4,112,667 to 4,113,956
_03882
Position (kb)
4111
4112
4113 Strain fitness (log2 ratio)
-2
-1
0
1 at 4110.410 kb on + strand, within ECD_03880 at 4110.460 kb on + strand, within ECD_03880 at 4110.461 kb on - strand, within ECD_03880 at 4110.471 kb on - strand, within ECD_03880 at 4110.471 kb on - strand, within ECD_03880 at 4110.514 kb on + strand, within ECD_03880 at 4110.559 kb on + strand, within ECD_03880 at 4110.560 kb on - strand, within ECD_03880 at 4110.614 kb on + strand, within ECD_03880 at 4110.739 kb on + strand, within ECD_03880 at 4110.740 kb on - strand, within ECD_03880 at 4110.755 kb on + strand, within ECD_03880 at 4110.755 kb on + strand, within ECD_03880 at 4110.755 kb on + strand, within ECD_03880 at 4110.924 kb on + strand, within ECD_03880 at 4110.925 kb on - strand, within ECD_03880 at 4110.934 kb on - strand, within ECD_03880 at 4111.044 kb on - strand, within ECD_03880 at 4111.055 kb on - strand, within ECD_03880 at 4111.055 kb on - strand, within ECD_03880 at 4111.085 kb on - strand, within ECD_03880 at 4111.234 kb on + strand at 4111.235 kb on - strand at 4111.258 kb on + strand at 4111.258 kb on + strand at 4111.259 kb on - strand at 4111.259 kb on - strand at 4111.259 kb on - strand at 4111.324 kb on + strand at 4111.401 kb on + strand at 4111.416 kb on - strand at 4111.416 kb on - strand at 4111.433 kb on - strand at 4111.434 kb on + strand at 4111.590 kb on + strand, within ECD_03881 at 4111.623 kb on - strand, within ECD_03881 at 4111.652 kb on - strand, within ECD_03881 at 4111.682 kb on + strand, within ECD_03881 at 4111.713 kb on + strand, within ECD_03881 at 4111.713 kb on + strand, within ECD_03881 at 4111.714 kb on - strand, within ECD_03881 at 4111.714 kb on - strand, within ECD_03881 at 4111.722 kb on + strand, within ECD_03881 at 4111.722 kb on + strand, within ECD_03881 at 4111.723 kb on - strand, within ECD_03881 at 4112.077 kb on - strand, within ECD_03881 at 4112.154 kb on + strand, within ECD_03881 at 4112.299 kb on - strand, within ECD_03881 at 4112.344 kb on - strand, within ECD_03881 at 4112.368 kb on - strand, within ECD_03881 at 4112.415 kb on + strand, within ECD_03881 at 4112.470 kb on + strand, within ECD_03881 at 4112.471 kb on - strand, within ECD_03881 at 4112.472 kb on + strand, within ECD_03881 at 4112.472 kb on + strand, within ECD_03881 at 4112.473 kb on - strand, within ECD_03881 at 4112.805 kb on + strand, within ECD_03882 at 4112.827 kb on - strand, within ECD_03882 at 4112.827 kb on - strand, within ECD_03882 at 4113.160 kb on + strand, within ECD_03882 at 4113.161 kb on - strand, within ECD_03882 at 4113.161 kb on - strand, within ECD_03882 at 4113.206 kb on + strand, within ECD_03882 at 4113.206 kb on + strand, within ECD_03882 at 4113.207 kb on - strand, within ECD_03882 at 4113.207 kb on - strand, within ECD_03882 at 4113.207 kb on - strand, within ECD_03882 at 4113.446 kb on + strand, within ECD_03882 at 4113.446 kb on + strand, within ECD_03882 at 4113.447 kb on - strand, within ECD_03882 at 4113.556 kb on + strand, within ECD_03882 at 4113.556 kb on + strand, within ECD_03882 at 4113.557 kb on - strand, within ECD_03882 at 4113.573 kb on + strand, within ECD_03882 at 4113.573 kb on + strand, within ECD_03882 at 4113.611 kb on + strand, within ECD_03882 at 4113.612 kb on - strand, within ECD_03882
Per-strain Table
Position Strand Gene LocusTag Fraction Ste04 remove 4,110,410 + ECD_03880 0.32 +0.2 4,110,460 + ECD_03880 0.35 +0.6 4,110,461 - ECD_03880 0.36 -0.2 4,110,471 - ECD_03880 0.36 +0.6 4,110,471 - ECD_03880 0.36 +0.5 4,110,514 + ECD_03880 0.39 +0.7 4,110,559 + ECD_03880 0.43 +0.4 4,110,560 - ECD_03880 0.43 +0.7 4,110,614 + ECD_03880 0.47 +0.7 4,110,739 + ECD_03880 0.56 -0.5 4,110,740 - ECD_03880 0.56 -0.2 4,110,755 + ECD_03880 0.57 +0.1 4,110,755 + ECD_03880 0.57 +0.8 4,110,755 + ECD_03880 0.57 -0.4 4,110,924 + ECD_03880 0.69 +0.8 4,110,925 - ECD_03880 0.69 +1.2 4,110,934 - ECD_03880 0.70 +0.3 4,111,044 - ECD_03880 0.78 +0.2 4,111,055 - ECD_03880 0.79 -0.0 4,111,055 - ECD_03880 0.79 -1.9 4,111,085 - ECD_03880 0.81 -0.5 4,111,234 + -1.7 4,111,235 - +0.2 4,111,258 + +1.7 4,111,258 + +0.1 4,111,259 - -0.8 4,111,259 - -1.3 4,111,259 - +0.1 4,111,324 + -0.0 4,111,401 + +0.2 4,111,416 - +0.0 4,111,416 - -0.1 4,111,433 - -0.3 4,111,434 + -0.3 4,111,590 + ECD_03881 0.18 +0.3 4,111,623 - ECD_03881 0.21 +0.2 4,111,652 - ECD_03881 0.23 +1.2 4,111,682 + ECD_03881 0.25 +0.2 4,111,713 + ECD_03881 0.28 +0.6 4,111,713 + ECD_03881 0.28 +1.0 4,111,714 - ECD_03881 0.28 -0.0 4,111,714 - ECD_03881 0.28 +0.7 4,111,722 + ECD_03881 0.28 -0.2 4,111,722 + ECD_03881 0.28 +0.1 4,111,723 - ECD_03881 0.29 +0.6 4,112,077 - ECD_03881 0.55 +0.1 4,112,154 + ECD_03881 0.61 -0.6 4,112,299 - ECD_03881 0.72 -1.0 4,112,344 - ECD_03881 0.75 -0.3 4,112,368 - ECD_03881 0.77 +0.7 4,112,415 + ECD_03881 0.81 +0.6 4,112,470 + ECD_03881 0.85 -0.4 4,112,471 - ECD_03881 0.85 +0.4 4,112,472 + ECD_03881 0.85 +0.4 4,112,472 + ECD_03881 0.85 -0.2 4,112,473 - ECD_03881 0.85 -0.1 4,112,805 + ECD_03882 0.11 -0.4 4,112,827 - ECD_03882 0.12 -0.6 4,112,827 - ECD_03882 0.12 -0.3 4,113,160 + ECD_03882 0.38 -0.8 4,113,161 - ECD_03882 0.38 -0.0 4,113,161 - ECD_03882 0.38 +0.8 4,113,206 + ECD_03882 0.42 +0.4 4,113,206 + ECD_03882 0.42 +1.0 4,113,207 - ECD_03882 0.42 +0.2 4,113,207 - ECD_03882 0.42 -0.1 4,113,207 - ECD_03882 0.42 +0.0 4,113,446 + ECD_03882 0.60 -1.1 4,113,446 + ECD_03882 0.60 +0.6 4,113,447 - ECD_03882 0.60 -0.3 4,113,556 + ECD_03882 0.69 -0.5 4,113,556 + ECD_03882 0.69 -0.1 4,113,557 - ECD_03882 0.69 -0.6 4,113,573 + ECD_03882 0.70 -0.9 4,113,573 + ECD_03882 0.70 +0.6 4,113,611 + ECD_03882 0.73 +0.2 4,113,612 - ECD_03882 0.73 +0.6
Or see this region's nucleotide sequence