Strain Fitness in Escherichia coli BL21 around ECD_03717

Experiment: Ste04

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03715 and ECD_03716 are separated by 5 nucleotidesECD_03716 and ECD_03717 are separated by 256 nucleotidesECD_03717 and ECD_03718 are separated by 261 nucleotides ECD_03715: ECD_03715 - hypothetical protein, at 3,914,928 to 3,915,788 _03715 ECD_03716: ECD_03716 - hypothetical protein, at 3,915,794 to 3,916,462 _03716 ECD_03717: ECD_03717 - putative carboxymethylenebutenolidase, at 3,916,719 to 3,917,528 _03717 ECD_03718: ECD_03718 - uridine phosphorylase, at 3,917,790 to 3,918,554 _03718 Position (kb) 3916 3917 3918Strain fitness (log2 ratio) -1 0 1at 3915.720 kb on + strandat 3915.720 kb on + strandat 3915.720 kb on + strandat 3915.783 kb on + strandat 3915.814 kb on + strandat 3915.880 kb on - strand, within ECD_03716at 3915.937 kb on - strand, within ECD_03716at 3915.937 kb on - strand, within ECD_03716at 3915.988 kb on + strand, within ECD_03716at 3915.988 kb on + strand, within ECD_03716at 3916.001 kb on + strand, within ECD_03716at 3916.001 kb on + strand, within ECD_03716at 3916.001 kb on + strand, within ECD_03716at 3916.002 kb on - strand, within ECD_03716at 3916.040 kb on + strand, within ECD_03716at 3916.040 kb on + strand, within ECD_03716at 3916.041 kb on - strand, within ECD_03716at 3916.041 kb on - strand, within ECD_03716at 3916.054 kb on - strand, within ECD_03716at 3916.054 kb on - strand, within ECD_03716at 3916.076 kb on - strand, within ECD_03716at 3916.224 kb on - strand, within ECD_03716at 3916.224 kb on - strand, within ECD_03716at 3916.255 kb on + strand, within ECD_03716at 3916.261 kb on + strand, within ECD_03716at 3916.261 kb on + strand, within ECD_03716at 3916.261 kb on + strand, within ECD_03716at 3916.261 kb on + strand, within ECD_03716at 3916.297 kb on + strand, within ECD_03716at 3916.297 kb on + strand, within ECD_03716at 3916.297 kb on + strand, within ECD_03716at 3916.298 kb on - strand, within ECD_03716at 3916.298 kb on - strand, within ECD_03716at 3916.298 kb on - strand, within ECD_03716at 3916.298 kb on - strand, within ECD_03716at 3916.320 kb on - strand, within ECD_03716at 3916.465 kb on + strandat 3916.465 kb on + strandat 3916.692 kb on + strandat 3916.692 kb on + strandat 3916.712 kb on + strandat 3916.712 kb on + strandat 3916.727 kb on + strandat 3916.735 kb on + strandat 3916.735 kb on + strandat 3916.735 kb on + strandat 3916.735 kb on + strandat 3916.735 kb on + strandat 3916.735 kb on + strandat 3916.735 kb on + strandat 3916.735 kb on + strandat 3916.736 kb on - strandat 3916.736 kb on - strandat 3916.736 kb on - strandat 3916.736 kb on - strandat 3916.736 kb on - strandat 3916.736 kb on - strandat 3916.792 kb on + strandat 3916.792 kb on + strandat 3916.792 kb on + strandat 3916.793 kb on - strandat 3916.793 kb on - strandat 3916.793 kb on - strandat 3916.793 kb on - strandat 3916.793 kb on - strandat 3916.793 kb on - strandat 3916.930 kb on + strand, within ECD_03717at 3916.930 kb on + strand, within ECD_03717at 3916.930 kb on + strand, within ECD_03717at 3916.931 kb on - strand, within ECD_03717at 3916.932 kb on + strand, within ECD_03717at 3916.932 kb on + strand, within ECD_03717at 3916.932 kb on + strand, within ECD_03717at 3916.932 kb on + strand, within ECD_03717at 3916.933 kb on - strand, within ECD_03717at 3916.933 kb on - strand, within ECD_03717at 3917.001 kb on - strand, within ECD_03717at 3917.040 kb on + strand, within ECD_03717at 3917.040 kb on + strand, within ECD_03717at 3917.040 kb on + strand, within ECD_03717at 3917.041 kb on - strand, within ECD_03717at 3917.062 kb on + strand, within ECD_03717at 3917.075 kb on + strand, within ECD_03717at 3917.075 kb on + strand, within ECD_03717at 3917.076 kb on - strand, within ECD_03717at 3917.076 kb on - strand, within ECD_03717at 3917.106 kb on + strand, within ECD_03717at 3917.107 kb on - strand, within ECD_03717at 3917.254 kb on + strand, within ECD_03717at 3917.254 kb on + strand, within ECD_03717at 3917.316 kb on - strand, within ECD_03717at 3917.346 kb on + strand, within ECD_03717at 3917.346 kb on + strand, within ECD_03717at 3917.347 kb on - strand, within ECD_03717at 3917.531 kb on + strandat 3917.532 kb on - strandat 3917.532 kb on - strandat 3917.532 kb on - strandat 3917.548 kb on + strandat 3917.567 kb on + strandat 3917.567 kb on + strandat 3917.567 kb on + strandat 3917.568 kb on - strandat 3917.568 kb on - strandat 3917.571 kb on + strandat 3917.571 kb on + strandat 3917.571 kb on + strandat 3917.571 kb on + strandat 3917.571 kb on + strandat 3917.572 kb on - strandat 3917.572 kb on - strandat 3917.572 kb on - strandat 3917.572 kb on - strandat 3917.572 kb on - strandat 3917.573 kb on + strandat 3917.573 kb on + strandat 3917.648 kb on - strandat 3917.648 kb on - strandat 3917.648 kb on - strandat 3917.648 kb on - strandat 3917.710 kb on + strandat 3917.711 kb on - strandat 3917.711 kb on - strandat 3917.787 kb on + strandat 3917.787 kb on + strandat 3917.787 kb on + strandat 3917.787 kb on + strandat 3917.787 kb on + strandat 3917.787 kb on + strandat 3917.787 kb on + strandat 3917.788 kb on - strandat 3917.788 kb on - strandat 3917.788 kb on - strandat 3917.788 kb on - strandat 3917.788 kb on - strandat 3917.788 kb on - strandat 3917.788 kb on - strandat 3917.788 kb on - strandat 3917.788 kb on - strandat 3917.788 kb on - strandat 3917.788 kb on - strandat 3917.788 kb on - strandat 3917.788 kb on - strandat 3917.788 kb on - strandat 3917.788 kb on - strandat 3917.788 kb on - strandat 3917.789 kb on + strandat 3917.789 kb on + strandat 3917.789 kb on + strandat 3917.789 kb on + strandat 3917.790 kb on - strandat 3917.790 kb on - strandat 3917.790 kb on - strandat 3917.790 kb on - strandat 3917.790 kb on - strandat 3917.825 kb on + strandat 3917.846 kb on + strandat 3917.846 kb on + strandat 3917.966 kb on + strand, within ECD_03718at 3917.966 kb on + strand, within ECD_03718at 3917.966 kb on + strand, within ECD_03718at 3918.008 kb on + strand, within ECD_03718at 3918.008 kb on + strand, within ECD_03718at 3918.009 kb on - strand, within ECD_03718at 3918.015 kb on - strand, within ECD_03718at 3918.015 kb on - strand, within ECD_03718at 3918.015 kb on - strand, within ECD_03718at 3918.092 kb on + strand, within ECD_03718at 3918.093 kb on - strand, within ECD_03718at 3918.095 kb on + strand, within ECD_03718at 3918.095 kb on + strand, within ECD_03718at 3918.096 kb on - strand, within ECD_03718at 3918.197 kb on + strand, within ECD_03718at 3918.198 kb on - strand, within ECD_03718at 3918.269 kb on + strand, within ECD_03718at 3918.270 kb on - strand, within ECD_03718at 3918.276 kb on + strand, within ECD_03718at 3918.276 kb on + strand, within ECD_03718at 3918.277 kb on - strand, within ECD_03718at 3918.299 kb on + strand, within ECD_03718at 3918.300 kb on - strand, within ECD_03718at 3918.300 kb on - strand, within ECD_03718at 3918.303 kb on + strand, within ECD_03718at 3918.304 kb on - strand, within ECD_03718at 3918.304 kb on - strand, within ECD_03718at 3918.304 kb on - strand, within ECD_03718at 3918.330 kb on - strand, within ECD_03718at 3918.330 kb on - strand, within ECD_03718at 3918.338 kb on + strand, within ECD_03718at 3918.338 kb on + strand, within ECD_03718at 3918.338 kb on + strand, within ECD_03718at 3918.338 kb on + strand, within ECD_03718at 3918.339 kb on - strand, within ECD_03718at 3918.339 kb on - strand, within ECD_03718at 3918.339 kb on - strand, within ECD_03718at 3918.372 kb on + strand, within ECD_03718at 3918.372 kb on + strand, within ECD_03718at 3918.372 kb on + strand, within ECD_03718at 3918.373 kb on - strand, within ECD_03718at 3918.373 kb on - strand, within ECD_03718at 3918.432 kb on - strand, within ECD_03718

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Per-strain Table

Position Strand Gene LocusTag Fraction Ste04
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3,915,720 + +0.0
3,915,720 + +0.3
3,915,720 + +0.3
3,915,783 + +0.8
3,915,814 + -0.8
3,915,880 - ECD_03716 0.13 -0.5
3,915,937 - ECD_03716 0.21 -0.7
3,915,937 - ECD_03716 0.21 -0.3
3,915,988 + ECD_03716 0.29 +0.3
3,915,988 + ECD_03716 0.29 +0.1
3,916,001 + ECD_03716 0.31 -0.6
3,916,001 + ECD_03716 0.31 +0.3
3,916,001 + ECD_03716 0.31 +0.3
3,916,002 - ECD_03716 0.31 +1.3
3,916,040 + ECD_03716 0.37 +0.7
3,916,040 + ECD_03716 0.37 -1.0
3,916,041 - ECD_03716 0.37 +0.5
3,916,041 - ECD_03716 0.37 +0.0
3,916,054 - ECD_03716 0.39 +0.6
3,916,054 - ECD_03716 0.39 -0.2
3,916,076 - ECD_03716 0.42 -0.3
3,916,224 - ECD_03716 0.64 -0.6
3,916,224 - ECD_03716 0.64 -0.5
3,916,255 + ECD_03716 0.69 +0.4
3,916,261 + ECD_03716 0.70 -0.2
3,916,261 + ECD_03716 0.70 +0.4
3,916,261 + ECD_03716 0.70 +1.3
3,916,261 + ECD_03716 0.70 +0.2
3,916,297 + ECD_03716 0.75 +0.7
3,916,297 + ECD_03716 0.75 -0.4
3,916,297 + ECD_03716 0.75 +1.4
3,916,298 - ECD_03716 0.75 -0.9
3,916,298 - ECD_03716 0.75 +0.3
3,916,298 - ECD_03716 0.75 +0.3
3,916,298 - ECD_03716 0.75 +0.3
3,916,320 - ECD_03716 0.79 +0.4
3,916,465 + -0.1
3,916,465 + +0.6
3,916,692 + -0.4
3,916,692 + -0.9
3,916,712 + +0.4
3,916,712 + -0.8
3,916,727 + +0.3
3,916,735 + +1.1
3,916,735 + +0.6
3,916,735 + +0.3
3,916,735 + -0.3
3,916,735 + -0.2
3,916,735 + -1.6
3,916,735 + -0.2
3,916,735 + +0.3
3,916,736 - +0.1
3,916,736 - +0.2
3,916,736 - -0.4
3,916,736 - -0.2
3,916,736 - -0.9
3,916,736 - -1.0
3,916,792 + -1.5
3,916,792 + +0.4
3,916,792 + -0.7
3,916,793 - +0.3
3,916,793 - -0.6
3,916,793 - +0.6
3,916,793 - -0.3
3,916,793 - +0.2
3,916,793 - +0.3
3,916,930 + ECD_03717 0.26 +0.1
3,916,930 + ECD_03717 0.26 +0.1
3,916,930 + ECD_03717 0.26 -0.4
3,916,931 - ECD_03717 0.26 -0.3
3,916,932 + ECD_03717 0.26 +0.1
3,916,932 + ECD_03717 0.26 +0.0
3,916,932 + ECD_03717 0.26 -0.5
3,916,932 + ECD_03717 0.26 -0.3
3,916,933 - ECD_03717 0.26 +1.6
3,916,933 - ECD_03717 0.26 -0.2
3,917,001 - ECD_03717 0.35 +1.4
3,917,040 + ECD_03717 0.40 +0.3
3,917,040 + ECD_03717 0.40 +0.4
3,917,040 + ECD_03717 0.40 +0.1
3,917,041 - ECD_03717 0.40 +1.5
3,917,062 + ECD_03717 0.42 -1.5
3,917,075 + ECD_03717 0.44 -1.4
3,917,075 + ECD_03717 0.44 +0.3
3,917,076 - ECD_03717 0.44 +1.0
3,917,076 - ECD_03717 0.44 +0.1
3,917,106 + ECD_03717 0.48 +1.6
3,917,107 - ECD_03717 0.48 +1.3
3,917,254 + ECD_03717 0.66 -0.3
3,917,254 + ECD_03717 0.66 +0.2
3,917,316 - ECD_03717 0.74 +0.0
3,917,346 + ECD_03717 0.77 -0.1
3,917,346 + ECD_03717 0.77 +0.1
3,917,347 - ECD_03717 0.78 -0.0
3,917,531 + +0.1
3,917,532 - -0.7
3,917,532 - -0.6
3,917,532 - -1.0
3,917,548 + -0.5
3,917,567 + -0.3
3,917,567 + -0.1
3,917,567 + -0.4
3,917,568 - +0.9
3,917,568 - -0.3
3,917,571 + +0.4
3,917,571 + +0.1
3,917,571 + -1.4
3,917,571 + -0.0
3,917,571 + +0.1
3,917,572 - +0.0
3,917,572 - -0.2
3,917,572 - -1.0
3,917,572 - -1.4
3,917,572 - -0.7
3,917,573 + -0.4
3,917,573 + -0.1
3,917,648 - +0.1
3,917,648 - -0.2
3,917,648 - -1.0
3,917,648 - -0.6
3,917,710 + +0.9
3,917,711 - -0.1
3,917,711 - -0.3
3,917,787 + +0.7
3,917,787 + +0.6
3,917,787 + -0.3
3,917,787 + +1.5
3,917,787 + +0.3
3,917,787 + +0.2
3,917,787 + +0.8
3,917,788 - +0.2
3,917,788 - +0.0
3,917,788 - -0.3
3,917,788 - +0.1
3,917,788 - -0.2
3,917,788 - -0.3
3,917,788 - -0.4
3,917,788 - +0.7
3,917,788 - +0.3
3,917,788 - +0.2
3,917,788 - -1.2
3,917,788 - +0.1
3,917,788 - -0.7
3,917,788 - +0.2
3,917,788 - +0.1
3,917,788 - -0.4
3,917,789 + -0.5
3,917,789 + -0.0
3,917,789 + -0.2
3,917,789 + +0.1
3,917,790 - -0.6
3,917,790 - +0.0
3,917,790 - +0.2
3,917,790 - +0.8
3,917,790 - +0.2
3,917,825 + -0.3
3,917,846 + +0.1
3,917,846 + -0.6
3,917,966 + ECD_03718 0.23 +0.4
3,917,966 + ECD_03718 0.23 -0.9
3,917,966 + ECD_03718 0.23 +0.7
3,918,008 + ECD_03718 0.28 +0.2
3,918,008 + ECD_03718 0.28 -0.9
3,918,009 - ECD_03718 0.29 +0.1
3,918,015 - ECD_03718 0.29 +0.7
3,918,015 - ECD_03718 0.29 -1.7
3,918,015 - ECD_03718 0.29 -0.2
3,918,092 + ECD_03718 0.39 -0.5
3,918,093 - ECD_03718 0.40 +0.7
3,918,095 + ECD_03718 0.40 -0.5
3,918,095 + ECD_03718 0.40 -0.9
3,918,096 - ECD_03718 0.40 -0.2
3,918,197 + ECD_03718 0.53 -0.5
3,918,198 - ECD_03718 0.53 -0.1
3,918,269 + ECD_03718 0.63 -0.9
3,918,270 - ECD_03718 0.63 -0.4
3,918,276 + ECD_03718 0.64 +0.2
3,918,276 + ECD_03718 0.64 -0.0
3,918,277 - ECD_03718 0.64 +0.3
3,918,299 + ECD_03718 0.67 -0.2
3,918,300 - ECD_03718 0.67 +0.3
3,918,300 - ECD_03718 0.67 +0.8
3,918,303 + ECD_03718 0.67 +0.7
3,918,304 - ECD_03718 0.67 +0.5
3,918,304 - ECD_03718 0.67 +0.3
3,918,304 - ECD_03718 0.67 -0.6
3,918,330 - ECD_03718 0.71 -0.6
3,918,330 - ECD_03718 0.71 +0.6
3,918,338 + ECD_03718 0.72 +0.7
3,918,338 + ECD_03718 0.72 +0.7
3,918,338 + ECD_03718 0.72 +1.1
3,918,338 + ECD_03718 0.72 -0.0
3,918,339 - ECD_03718 0.72 +0.3
3,918,339 - ECD_03718 0.72 +0.3
3,918,339 - ECD_03718 0.72 -0.3
3,918,372 + ECD_03718 0.76 +0.3
3,918,372 + ECD_03718 0.76 -1.0
3,918,372 + ECD_03718 0.76 -1.5
3,918,373 - ECD_03718 0.76 +0.7
3,918,373 - ECD_03718 0.76 -0.1
3,918,432 - ECD_03718 0.84 -1.2

Or see this region's nucleotide sequence