Experiment: Ste04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03715 and ECD_03716 are separated by 5 nucleotides ECD_03716 and ECD_03717 are separated by 256 nucleotides ECD_03717 and ECD_03718 are separated by 261 nucleotides
ECD_03715: ECD_03715 - hypothetical protein, at 3,914,928 to 3,915,788
_03715
ECD_03716: ECD_03716 - hypothetical protein, at 3,915,794 to 3,916,462
_03716
ECD_03717: ECD_03717 - putative carboxymethylenebutenolidase, at 3,916,719 to 3,917,528
_03717
ECD_03718: ECD_03718 - uridine phosphorylase, at 3,917,790 to 3,918,554
_03718
Position (kb)
3916
3917
3918 Strain fitness (log2 ratio)
-1
0
1 at 3915.720 kb on + strand at 3915.720 kb on + strand at 3915.720 kb on + strand at 3915.783 kb on + strand at 3915.814 kb on + strand at 3915.880 kb on - strand, within ECD_03716 at 3915.937 kb on - strand, within ECD_03716 at 3915.937 kb on - strand, within ECD_03716 at 3915.988 kb on + strand, within ECD_03716 at 3915.988 kb on + strand, within ECD_03716 at 3916.001 kb on + strand, within ECD_03716 at 3916.001 kb on + strand, within ECD_03716 at 3916.001 kb on + strand, within ECD_03716 at 3916.002 kb on - strand, within ECD_03716 at 3916.040 kb on + strand, within ECD_03716 at 3916.040 kb on + strand, within ECD_03716 at 3916.041 kb on - strand, within ECD_03716 at 3916.041 kb on - strand, within ECD_03716 at 3916.054 kb on - strand, within ECD_03716 at 3916.054 kb on - strand, within ECD_03716 at 3916.076 kb on - strand, within ECD_03716 at 3916.224 kb on - strand, within ECD_03716 at 3916.224 kb on - strand, within ECD_03716 at 3916.255 kb on + strand, within ECD_03716 at 3916.261 kb on + strand, within ECD_03716 at 3916.261 kb on + strand, within ECD_03716 at 3916.261 kb on + strand, within ECD_03716 at 3916.261 kb on + strand, within ECD_03716 at 3916.297 kb on + strand, within ECD_03716 at 3916.297 kb on + strand, within ECD_03716 at 3916.297 kb on + strand, within ECD_03716 at 3916.298 kb on - strand, within ECD_03716 at 3916.298 kb on - strand, within ECD_03716 at 3916.298 kb on - strand, within ECD_03716 at 3916.298 kb on - strand, within ECD_03716 at 3916.320 kb on - strand, within ECD_03716 at 3916.465 kb on + strand at 3916.465 kb on + strand at 3916.692 kb on + strand at 3916.692 kb on + strand at 3916.712 kb on + strand at 3916.712 kb on + strand at 3916.727 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.736 kb on - strand at 3916.736 kb on - strand at 3916.736 kb on - strand at 3916.736 kb on - strand at 3916.736 kb on - strand at 3916.736 kb on - strand at 3916.792 kb on + strand at 3916.792 kb on + strand at 3916.792 kb on + strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.930 kb on + strand, within ECD_03717 at 3916.930 kb on + strand, within ECD_03717 at 3916.930 kb on + strand, within ECD_03717 at 3916.931 kb on - strand, within ECD_03717 at 3916.932 kb on + strand, within ECD_03717 at 3916.932 kb on + strand, within ECD_03717 at 3916.932 kb on + strand, within ECD_03717 at 3916.932 kb on + strand, within ECD_03717 at 3916.933 kb on - strand, within ECD_03717 at 3916.933 kb on - strand, within ECD_03717 at 3917.001 kb on - strand, within ECD_03717 at 3917.040 kb on + strand, within ECD_03717 at 3917.040 kb on + strand, within ECD_03717 at 3917.040 kb on + strand, within ECD_03717 at 3917.041 kb on - strand, within ECD_03717 at 3917.062 kb on + strand, within ECD_03717 at 3917.075 kb on + strand, within ECD_03717 at 3917.075 kb on + strand, within ECD_03717 at 3917.076 kb on - strand, within ECD_03717 at 3917.076 kb on - strand, within ECD_03717 at 3917.106 kb on + strand, within ECD_03717 at 3917.107 kb on - strand, within ECD_03717 at 3917.254 kb on + strand, within ECD_03717 at 3917.254 kb on + strand, within ECD_03717 at 3917.316 kb on - strand, within ECD_03717 at 3917.346 kb on + strand, within ECD_03717 at 3917.346 kb on + strand, within ECD_03717 at 3917.347 kb on - strand, within ECD_03717 at 3917.531 kb on + strand at 3917.532 kb on - strand at 3917.532 kb on - strand at 3917.532 kb on - strand at 3917.548 kb on + strand at 3917.567 kb on + strand at 3917.567 kb on + strand at 3917.567 kb on + strand at 3917.568 kb on - strand at 3917.568 kb on - strand at 3917.571 kb on + strand at 3917.571 kb on + strand at 3917.571 kb on + strand at 3917.571 kb on + strand at 3917.571 kb on + strand at 3917.572 kb on - strand at 3917.572 kb on - strand at 3917.572 kb on - strand at 3917.572 kb on - strand at 3917.572 kb on - strand at 3917.573 kb on + strand at 3917.573 kb on + strand at 3917.648 kb on - strand at 3917.648 kb on - strand at 3917.648 kb on - strand at 3917.648 kb on - strand at 3917.710 kb on + strand at 3917.711 kb on - strand at 3917.711 kb on - strand at 3917.787 kb on + strand at 3917.787 kb on + strand at 3917.787 kb on + strand at 3917.787 kb on + strand at 3917.787 kb on + strand at 3917.787 kb on + strand at 3917.787 kb on + strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.788 kb on - strand at 3917.789 kb on + strand at 3917.789 kb on + strand at 3917.789 kb on + strand at 3917.789 kb on + strand at 3917.790 kb on - strand at 3917.790 kb on - strand at 3917.790 kb on - strand at 3917.790 kb on - strand at 3917.790 kb on - strand at 3917.825 kb on + strand at 3917.846 kb on + strand at 3917.846 kb on + strand at 3917.966 kb on + strand, within ECD_03718 at 3917.966 kb on + strand, within ECD_03718 at 3917.966 kb on + strand, within ECD_03718 at 3918.008 kb on + strand, within ECD_03718 at 3918.008 kb on + strand, within ECD_03718 at 3918.009 kb on - strand, within ECD_03718 at 3918.015 kb on - strand, within ECD_03718 at 3918.015 kb on - strand, within ECD_03718 at 3918.015 kb on - strand, within ECD_03718 at 3918.092 kb on + strand, within ECD_03718 at 3918.093 kb on - strand, within ECD_03718 at 3918.095 kb on + strand, within ECD_03718 at 3918.095 kb on + strand, within ECD_03718 at 3918.096 kb on - strand, within ECD_03718 at 3918.197 kb on + strand, within ECD_03718 at 3918.198 kb on - strand, within ECD_03718 at 3918.269 kb on + strand, within ECD_03718 at 3918.270 kb on - strand, within ECD_03718 at 3918.276 kb on + strand, within ECD_03718 at 3918.276 kb on + strand, within ECD_03718 at 3918.277 kb on - strand, within ECD_03718 at 3918.299 kb on + strand, within ECD_03718 at 3918.300 kb on - strand, within ECD_03718 at 3918.300 kb on - strand, within ECD_03718 at 3918.303 kb on + strand, within ECD_03718 at 3918.304 kb on - strand, within ECD_03718 at 3918.304 kb on - strand, within ECD_03718 at 3918.304 kb on - strand, within ECD_03718 at 3918.330 kb on - strand, within ECD_03718 at 3918.330 kb on - strand, within ECD_03718 at 3918.338 kb on + strand, within ECD_03718 at 3918.338 kb on + strand, within ECD_03718 at 3918.338 kb on + strand, within ECD_03718 at 3918.338 kb on + strand, within ECD_03718 at 3918.339 kb on - strand, within ECD_03718 at 3918.339 kb on - strand, within ECD_03718 at 3918.339 kb on - strand, within ECD_03718 at 3918.372 kb on + strand, within ECD_03718 at 3918.372 kb on + strand, within ECD_03718 at 3918.372 kb on + strand, within ECD_03718 at 3918.373 kb on - strand, within ECD_03718 at 3918.373 kb on - strand, within ECD_03718 at 3918.432 kb on - strand, within ECD_03718
Per-strain Table
Position Strand Gene LocusTag Fraction Ste04 remove 3,915,720 + +0.0 3,915,720 + +0.3 3,915,720 + +0.3 3,915,783 + +0.8 3,915,814 + -0.8 3,915,880 - ECD_03716 0.13 -0.5 3,915,937 - ECD_03716 0.21 -0.7 3,915,937 - ECD_03716 0.21 -0.3 3,915,988 + ECD_03716 0.29 +0.3 3,915,988 + ECD_03716 0.29 +0.1 3,916,001 + ECD_03716 0.31 -0.6 3,916,001 + ECD_03716 0.31 +0.3 3,916,001 + ECD_03716 0.31 +0.3 3,916,002 - ECD_03716 0.31 +1.3 3,916,040 + ECD_03716 0.37 +0.7 3,916,040 + ECD_03716 0.37 -1.0 3,916,041 - ECD_03716 0.37 +0.5 3,916,041 - ECD_03716 0.37 +0.0 3,916,054 - ECD_03716 0.39 +0.6 3,916,054 - ECD_03716 0.39 -0.2 3,916,076 - ECD_03716 0.42 -0.3 3,916,224 - ECD_03716 0.64 -0.6 3,916,224 - ECD_03716 0.64 -0.5 3,916,255 + ECD_03716 0.69 +0.4 3,916,261 + ECD_03716 0.70 -0.2 3,916,261 + ECD_03716 0.70 +0.4 3,916,261 + ECD_03716 0.70 +1.3 3,916,261 + ECD_03716 0.70 +0.2 3,916,297 + ECD_03716 0.75 +0.7 3,916,297 + ECD_03716 0.75 -0.4 3,916,297 + ECD_03716 0.75 +1.4 3,916,298 - ECD_03716 0.75 -0.9 3,916,298 - ECD_03716 0.75 +0.3 3,916,298 - ECD_03716 0.75 +0.3 3,916,298 - ECD_03716 0.75 +0.3 3,916,320 - ECD_03716 0.79 +0.4 3,916,465 + -0.1 3,916,465 + +0.6 3,916,692 + -0.4 3,916,692 + -0.9 3,916,712 + +0.4 3,916,712 + -0.8 3,916,727 + +0.3 3,916,735 + +1.1 3,916,735 + +0.6 3,916,735 + +0.3 3,916,735 + -0.3 3,916,735 + -0.2 3,916,735 + -1.6 3,916,735 + -0.2 3,916,735 + +0.3 3,916,736 - +0.1 3,916,736 - +0.2 3,916,736 - -0.4 3,916,736 - -0.2 3,916,736 - -0.9 3,916,736 - -1.0 3,916,792 + -1.5 3,916,792 + +0.4 3,916,792 + -0.7 3,916,793 - +0.3 3,916,793 - -0.6 3,916,793 - +0.6 3,916,793 - -0.3 3,916,793 - +0.2 3,916,793 - +0.3 3,916,930 + ECD_03717 0.26 +0.1 3,916,930 + ECD_03717 0.26 +0.1 3,916,930 + ECD_03717 0.26 -0.4 3,916,931 - ECD_03717 0.26 -0.3 3,916,932 + ECD_03717 0.26 +0.1 3,916,932 + ECD_03717 0.26 +0.0 3,916,932 + ECD_03717 0.26 -0.5 3,916,932 + ECD_03717 0.26 -0.3 3,916,933 - ECD_03717 0.26 +1.6 3,916,933 - ECD_03717 0.26 -0.2 3,917,001 - ECD_03717 0.35 +1.4 3,917,040 + ECD_03717 0.40 +0.3 3,917,040 + ECD_03717 0.40 +0.4 3,917,040 + ECD_03717 0.40 +0.1 3,917,041 - ECD_03717 0.40 +1.5 3,917,062 + ECD_03717 0.42 -1.5 3,917,075 + ECD_03717 0.44 -1.4 3,917,075 + ECD_03717 0.44 +0.3 3,917,076 - ECD_03717 0.44 +1.0 3,917,076 - ECD_03717 0.44 +0.1 3,917,106 + ECD_03717 0.48 +1.6 3,917,107 - ECD_03717 0.48 +1.3 3,917,254 + ECD_03717 0.66 -0.3 3,917,254 + ECD_03717 0.66 +0.2 3,917,316 - ECD_03717 0.74 +0.0 3,917,346 + ECD_03717 0.77 -0.1 3,917,346 + ECD_03717 0.77 +0.1 3,917,347 - ECD_03717 0.78 -0.0 3,917,531 + +0.1 3,917,532 - -0.7 3,917,532 - -0.6 3,917,532 - -1.0 3,917,548 + -0.5 3,917,567 + -0.3 3,917,567 + -0.1 3,917,567 + -0.4 3,917,568 - +0.9 3,917,568 - -0.3 3,917,571 + +0.4 3,917,571 + +0.1 3,917,571 + -1.4 3,917,571 + -0.0 3,917,571 + +0.1 3,917,572 - +0.0 3,917,572 - -0.2 3,917,572 - -1.0 3,917,572 - -1.4 3,917,572 - -0.7 3,917,573 + -0.4 3,917,573 + -0.1 3,917,648 - +0.1 3,917,648 - -0.2 3,917,648 - -1.0 3,917,648 - -0.6 3,917,710 + +0.9 3,917,711 - -0.1 3,917,711 - -0.3 3,917,787 + +0.7 3,917,787 + +0.6 3,917,787 + -0.3 3,917,787 + +1.5 3,917,787 + +0.3 3,917,787 + +0.2 3,917,787 + +0.8 3,917,788 - +0.2 3,917,788 - +0.0 3,917,788 - -0.3 3,917,788 - +0.1 3,917,788 - -0.2 3,917,788 - -0.3 3,917,788 - -0.4 3,917,788 - +0.7 3,917,788 - +0.3 3,917,788 - +0.2 3,917,788 - -1.2 3,917,788 - +0.1 3,917,788 - -0.7 3,917,788 - +0.2 3,917,788 - +0.1 3,917,788 - -0.4 3,917,789 + -0.5 3,917,789 + -0.0 3,917,789 + -0.2 3,917,789 + +0.1 3,917,790 - -0.6 3,917,790 - +0.0 3,917,790 - +0.2 3,917,790 - +0.8 3,917,790 - +0.2 3,917,825 + -0.3 3,917,846 + +0.1 3,917,846 + -0.6 3,917,966 + ECD_03718 0.23 +0.4 3,917,966 + ECD_03718 0.23 -0.9 3,917,966 + ECD_03718 0.23 +0.7 3,918,008 + ECD_03718 0.28 +0.2 3,918,008 + ECD_03718 0.28 -0.9 3,918,009 - ECD_03718 0.29 +0.1 3,918,015 - ECD_03718 0.29 +0.7 3,918,015 - ECD_03718 0.29 -1.7 3,918,015 - ECD_03718 0.29 -0.2 3,918,092 + ECD_03718 0.39 -0.5 3,918,093 - ECD_03718 0.40 +0.7 3,918,095 + ECD_03718 0.40 -0.5 3,918,095 + ECD_03718 0.40 -0.9 3,918,096 - ECD_03718 0.40 -0.2 3,918,197 + ECD_03718 0.53 -0.5 3,918,198 - ECD_03718 0.53 -0.1 3,918,269 + ECD_03718 0.63 -0.9 3,918,270 - ECD_03718 0.63 -0.4 3,918,276 + ECD_03718 0.64 +0.2 3,918,276 + ECD_03718 0.64 -0.0 3,918,277 - ECD_03718 0.64 +0.3 3,918,299 + ECD_03718 0.67 -0.2 3,918,300 - ECD_03718 0.67 +0.3 3,918,300 - ECD_03718 0.67 +0.8 3,918,303 + ECD_03718 0.67 +0.7 3,918,304 - ECD_03718 0.67 +0.5 3,918,304 - ECD_03718 0.67 +0.3 3,918,304 - ECD_03718 0.67 -0.6 3,918,330 - ECD_03718 0.71 -0.6 3,918,330 - ECD_03718 0.71 +0.6 3,918,338 + ECD_03718 0.72 +0.7 3,918,338 + ECD_03718 0.72 +0.7 3,918,338 + ECD_03718 0.72 +1.1 3,918,338 + ECD_03718 0.72 -0.0 3,918,339 - ECD_03718 0.72 +0.3 3,918,339 - ECD_03718 0.72 +0.3 3,918,339 - ECD_03718 0.72 -0.3 3,918,372 + ECD_03718 0.76 +0.3 3,918,372 + ECD_03718 0.76 -1.0 3,918,372 + ECD_03718 0.76 -1.5 3,918,373 - ECD_03718 0.76 +0.7 3,918,373 - ECD_03718 0.76 -0.1 3,918,432 - ECD_03718 0.84 -1.2
Or see this region's nucleotide sequence