Strain Fitness in Escherichia coli BL21 around ECD_02132

Experiment: Ste04

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02130 and ECD_02131 overlap by 4 nucleotidesECD_02131 and ECD_02132 overlap by 14 nucleotidesECD_02132 and ECD_02133 are separated by 6 nucleotides ECD_02130: ECD_02130 - nitrate reductase, small, cytochrome C550 subunit, periplasmic, at 2,191,919 to 2,192,368 _02130 ECD_02131: ECD_02131 - ferredoxin-type protein, at 2,192,365 to 2,193,228 _02131 ECD_02132: ECD_02132 - ferredoxin-type protein, at 2,193,215 to 2,193,910 _02132 ECD_02133: ECD_02133 - nitrate reductase, periplasmic, large subunit, at 2,193,917 to 2,196,403 _02133 Position (kb) 2193 2194Strain fitness (log2 ratio) -2 -1 0 1at 2192.395 kb on - strandat 2192.403 kb on + strandat 2192.403 kb on + strandat 2192.404 kb on - strandat 2192.404 kb on - strandat 2192.408 kb on - strandat 2192.408 kb on - strandat 2192.408 kb on - strandat 2192.408 kb on - strandat 2192.504 kb on - strand, within ECD_02131at 2192.504 kb on - strand, within ECD_02131at 2192.610 kb on - strand, within ECD_02131at 2192.663 kb on - strand, within ECD_02131at 2192.689 kb on - strand, within ECD_02131at 2192.777 kb on - strand, within ECD_02131at 2192.879 kb on - strand, within ECD_02131at 2193.069 kb on - strand, within ECD_02131at 2193.266 kb on + strandat 2193.266 kb on + strandat 2193.267 kb on - strandat 2193.340 kb on + strand, within ECD_02132at 2193.693 kb on + strand, within ECD_02132at 2194.033 kb on - strandat 2194.033 kb on - strandat 2194.033 kb on - strandat 2194.270 kb on - strand, within ECD_02133at 2194.345 kb on - strand, within ECD_02133at 2194.456 kb on - strand, within ECD_02133at 2194.456 kb on - strand, within ECD_02133at 2194.507 kb on - strand, within ECD_02133at 2194.534 kb on - strand, within ECD_02133at 2194.617 kb on + strand, within ECD_02133at 2194.618 kb on - strand, within ECD_02133at 2194.682 kb on + strand, within ECD_02133at 2194.683 kb on - strand, within ECD_02133

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ste04
remove
2,192,395 - -0.6
2,192,403 + +0.3
2,192,403 + +0.6
2,192,404 - +0.3
2,192,404 - -0.7
2,192,408 - -0.7
2,192,408 - -0.6
2,192,408 - -0.8
2,192,408 - +0.2
2,192,504 - ECD_02131 0.16 +1.1
2,192,504 - ECD_02131 0.16 -0.4
2,192,610 - ECD_02131 0.28 -0.6
2,192,663 - ECD_02131 0.34 +0.1
2,192,689 - ECD_02131 0.38 -0.8
2,192,777 - ECD_02131 0.48 -0.9
2,192,879 - ECD_02131 0.59 -0.5
2,193,069 - ECD_02131 0.81 -2.1
2,193,266 + +0.4
2,193,266 + +0.8
2,193,267 - -0.5
2,193,340 + ECD_02132 0.18 +0.3
2,193,693 + ECD_02132 0.69 +0.8
2,194,033 - +1.3
2,194,033 - +1.1
2,194,033 - +1.1
2,194,270 - ECD_02133 0.14 +1.4
2,194,345 - ECD_02133 0.17 -0.2
2,194,456 - ECD_02133 0.22 -0.5
2,194,456 - ECD_02133 0.22 +1.4
2,194,507 - ECD_02133 0.24 -0.2
2,194,534 - ECD_02133 0.25 -0.2
2,194,617 + ECD_02133 0.28 -0.9
2,194,618 - ECD_02133 0.28 -0.2
2,194,682 + ECD_02133 0.31 -0.4
2,194,683 - ECD_02133 0.31 -2.5

Or see this region's nucleotide sequence