Experiment: Ste04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00583 and ECD_00584 are separated by 10 nucleotides ECD_00584 and ECD_00585 overlap by 4 nucleotides ECD_00585 and ECD_00586 are separated by 14 nucleotides
ECD_00583: ECD_00583 - citrate lyase, citrate-ACP transferase (alpha) subunit, at 607,869 to 609,401
_00583
ECD_00584: ECD_00584 - citrate lyase, citryl-ACP lyase (beta) subunit, at 609,412 to 610,320
_00584
ECD_00585: ECD_00585 - citrate lyase, acyl carrier (gamma) subunit, at 610,317 to 610,613
_00585
ECD_00586: ECD_00586 - citrate lyase ligase; [citrate [pro-3S]-lyase] ligase, at 610,628 to 611,686
_00586
Position (kb) 609
610
611 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 608.642 kb on + strand, within ECD_00583 at 609.044 kb on - strand, within ECD_00583 at 609.079 kb on - strand, within ECD_00583 at 609.547 kb on + strand, within ECD_00584 at 609.590 kb on + strand, within ECD_00584 at 609.822 kb on - strand, within ECD_00584 at 609.981 kb on + strand, within ECD_00584 at 610.294 kb on - strand at 610.448 kb on - strand, within ECD_00585 at 610.557 kb on + strand, within ECD_00585 at 610.558 kb on - strand, within ECD_00585 at 610.926 kb on - strand, within ECD_00586 at 611.017 kb on - strand, within ECD_00586 at 611.017 kb on - strand, within ECD_00586 at 611.046 kb on + strand, within ECD_00586 at 611.046 kb on + strand, within ECD_00586 at 611.046 kb on + strand, within ECD_00586 at 611.150 kb on + strand, within ECD_00586 at 611.199 kb on + strand, within ECD_00586
Per-strain Table
Position Strand Gene LocusTag Fraction Ste04 remove 608,642 + ECD_00583 0.50 +0.5 609,044 - ECD_00583 0.77 +0.4 609,079 - ECD_00583 0.79 +0.6 609,547 + ECD_00584 0.15 +0.1 609,590 + ECD_00584 0.20 -2.8 609,822 - ECD_00584 0.45 -0.9 609,981 + ECD_00584 0.63 +0.6 610,294 - -0.0 610,448 - ECD_00585 0.44 -0.1 610,557 + ECD_00585 0.81 +0.1 610,558 - ECD_00585 0.81 -1.0 610,926 - ECD_00586 0.28 +0.2 611,017 - ECD_00586 0.37 +0.1 611,017 - ECD_00586 0.37 +0.5 611,046 + ECD_00586 0.39 -0.3 611,046 + ECD_00586 0.39 -0.1 611,046 + ECD_00586 0.39 -0.9 611,150 + ECD_00586 0.49 +1.6 611,199 + ECD_00586 0.54 +0.4
Or see this region's nucleotide sequence