Strain Fitness in Escherichia coli BL21 around ECD_00348

Experiment: Ste04

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00346 and ECD_00347 are separated by 189 nucleotidesECD_00347 and ECD_00348 are separated by 57 nucleotidesECD_00348 and ECD_00349 are separated by 406 nucleotides ECD_00346: ECD_00346 - exonuclease, dsDNA, ATP-dependent, at 381,152 to 382,354 _00346 ECD_00347: ECD_00347 - response regulator in two-component regulatory system with PhoR, at 382,544 to 383,233 _00347 ECD_00348: ECD_00348 - sensory histidine kinase in two-component regulatory system with PhoB, at 383,291 to 384,586 _00348 ECD_00349: ECD_00349 - branched-chain amino acid transport system 2 carrier protein; LIV-II transport system for Ile, Leu, and Val, at 384,993 to 386,312 _00349 Position (kb) 383 384 385Strain fitness (log2 ratio) -2 -1 0 1at 382.389 kb on - strandat 382.449 kb on + strandat 382.449 kb on + strandat 382.493 kb on + strandat 382.507 kb on + strandat 382.508 kb on - strandat 382.521 kb on + strandat 382.525 kb on + strandat 382.525 kb on + strandat 382.525 kb on + strandat 382.526 kb on - strandat 382.528 kb on + strandat 382.646 kb on + strand, within ECD_00347at 382.710 kb on + strand, within ECD_00347at 382.847 kb on + strand, within ECD_00347at 382.850 kb on - strand, within ECD_00347at 383.101 kb on + strand, within ECD_00347at 383.102 kb on - strand, within ECD_00347at 383.108 kb on + strand, within ECD_00347at 383.108 kb on + strand, within ECD_00347at 383.109 kb on - strand, within ECD_00347at 383.109 kb on - strand, within ECD_00347at 383.109 kb on - strand, within ECD_00347at 383.122 kb on + strand, within ECD_00347at 383.148 kb on + strand, within ECD_00347at 383.153 kb on - strand, within ECD_00347at 383.153 kb on - strand, within ECD_00347at 383.264 kb on + strandat 383.283 kb on + strandat 383.288 kb on + strandat 383.288 kb on + strandat 383.288 kb on + strandat 383.289 kb on - strandat 383.289 kb on - strandat 383.289 kb on - strandat 383.289 kb on - strandat 383.334 kb on + strandat 383.419 kb on + strandat 383.473 kb on + strand, within ECD_00348at 383.473 kb on + strand, within ECD_00348at 383.473 kb on + strand, within ECD_00348at 383.473 kb on + strand, within ECD_00348at 383.474 kb on - strand, within ECD_00348at 383.474 kb on - strand, within ECD_00348at 383.517 kb on + strand, within ECD_00348at 383.519 kb on + strand, within ECD_00348at 383.549 kb on - strand, within ECD_00348at 383.659 kb on + strand, within ECD_00348at 383.834 kb on + strand, within ECD_00348at 383.834 kb on + strand, within ECD_00348at 383.834 kb on + strand, within ECD_00348at 383.835 kb on - strand, within ECD_00348at 383.835 kb on - strand, within ECD_00348at 383.835 kb on - strand, within ECD_00348at 383.934 kb on + strand, within ECD_00348at 383.935 kb on - strand, within ECD_00348at 383.935 kb on - strand, within ECD_00348at 383.935 kb on - strand, within ECD_00348at 383.935 kb on - strand, within ECD_00348at 383.938 kb on + strand, within ECD_00348at 384.193 kb on + strand, within ECD_00348at 384.205 kb on - strand, within ECD_00348at 384.269 kb on + strand, within ECD_00348at 384.269 kb on + strand, within ECD_00348at 384.270 kb on - strand, within ECD_00348at 384.304 kb on + strand, within ECD_00348at 384.305 kb on - strand, within ECD_00348at 384.312 kb on + strand, within ECD_00348at 384.518 kb on - strandat 384.564 kb on + strandat 384.834 kb on + strandat 384.894 kb on - strandat 384.917 kb on + strandat 384.962 kb on + strandat 384.962 kb on + strandat 384.985 kb on + strandat 384.986 kb on - strandat 384.992 kb on + strandat 384.993 kb on - strandat 385.006 kb on + strandat 385.067 kb on + strandat 385.067 kb on + strandat 385.074 kb on - strandat 385.261 kb on - strand, within ECD_00349at 385.366 kb on - strand, within ECD_00349at 385.366 kb on - strand, within ECD_00349at 385.366 kb on - strand, within ECD_00349at 385.378 kb on - strand, within ECD_00349at 385.511 kb on + strand, within ECD_00349at 385.511 kb on + strand, within ECD_00349at 385.512 kb on - strand, within ECD_00349at 385.586 kb on + strand, within ECD_00349

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Per-strain Table

Position Strand Gene LocusTag Fraction Ste04
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382,389 - +0.3
382,449 + -0.4
382,449 + +0.7
382,493 + -1.7
382,507 + -0.2
382,508 - -0.7
382,521 + -0.8
382,525 + +0.1
382,525 + +0.9
382,525 + +0.7
382,526 - +0.4
382,528 + +0.0
382,646 + ECD_00347 0.15 -0.9
382,710 + ECD_00347 0.24 -1.0
382,847 + ECD_00347 0.44 +0.9
382,850 - ECD_00347 0.44 -1.4
383,101 + ECD_00347 0.81 -0.4
383,102 - ECD_00347 0.81 -1.9
383,108 + ECD_00347 0.82 +0.6
383,108 + ECD_00347 0.82 -0.2
383,109 - ECD_00347 0.82 +1.3
383,109 - ECD_00347 0.82 +0.4
383,109 - ECD_00347 0.82 +0.7
383,122 + ECD_00347 0.84 -0.3
383,148 + ECD_00347 0.88 -0.1
383,153 - ECD_00347 0.88 +0.1
383,153 - ECD_00347 0.88 -0.3
383,264 + +0.8
383,283 + +0.4
383,288 + -0.0
383,288 + -0.2
383,288 + -0.5
383,289 - +0.1
383,289 - +1.2
383,289 - +0.3
383,289 - -0.5
383,334 + -0.2
383,419 + +0.8
383,473 + ECD_00348 0.14 -0.0
383,473 + ECD_00348 0.14 -0.6
383,473 + ECD_00348 0.14 +0.2
383,473 + ECD_00348 0.14 -0.8
383,474 - ECD_00348 0.14 +0.5
383,474 - ECD_00348 0.14 -0.0
383,517 + ECD_00348 0.17 -0.4
383,519 + ECD_00348 0.18 -0.2
383,549 - ECD_00348 0.20 -0.3
383,659 + ECD_00348 0.28 +0.1
383,834 + ECD_00348 0.42 +0.7
383,834 + ECD_00348 0.42 +0.1
383,834 + ECD_00348 0.42 +0.5
383,835 - ECD_00348 0.42 -0.3
383,835 - ECD_00348 0.42 +0.2
383,835 - ECD_00348 0.42 -1.1
383,934 + ECD_00348 0.50 -0.6
383,935 - ECD_00348 0.50 -0.2
383,935 - ECD_00348 0.50 -0.1
383,935 - ECD_00348 0.50 -0.4
383,935 - ECD_00348 0.50 +0.7
383,938 + ECD_00348 0.50 -1.0
384,193 + ECD_00348 0.70 +0.5
384,205 - ECD_00348 0.71 -0.8
384,269 + ECD_00348 0.75 +0.1
384,269 + ECD_00348 0.75 -0.3
384,270 - ECD_00348 0.76 -0.3
384,304 + ECD_00348 0.78 -1.1
384,305 - ECD_00348 0.78 -0.6
384,312 + ECD_00348 0.79 +0.1
384,518 - +0.1
384,564 + +0.1
384,834 + -0.3
384,894 - +0.8
384,917 + -0.0
384,962 + -0.6
384,962 + +0.3
384,985 + +0.9
384,986 - -0.3
384,992 + -0.5
384,993 - +0.2
385,006 + +1.0
385,067 + -0.1
385,067 + -0.3
385,074 - -0.5
385,261 - ECD_00349 0.20 +0.3
385,366 - ECD_00349 0.28 +1.1
385,366 - ECD_00349 0.28 -0.0
385,366 - ECD_00349 0.28 -0.0
385,378 - ECD_00349 0.29 +0.5
385,511 + ECD_00349 0.39 -0.0
385,511 + ECD_00349 0.39 -0.2
385,512 - ECD_00349 0.39 +0.9
385,586 + ECD_00349 0.45 +0.3

Or see this region's nucleotide sequence