Strain Fitness in Escherichia coli BL21 around ECD_04303

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01006 and ECD_01007 are separated by 20 nucleotidesECD_01007 and ECD_04303 are separated by 203 nucleotidesECD_04303 and ECD_01008 overlap by 68 nucleotidesECD_01008 and ECD_01009 are separated by 257 nucleotides ECD_01006: ECD_01006 - uncharacterized protein, at 1,071,145 to 1,071,372 _01006 ECD_01007: ECD_01007 - NAD(P)H:quinone oxidoreductase, at 1,071,393 to 1,071,989 _01007 ECD_04303: ECD_04303 - KGG family protein, at 1,072,193 to 1,072,429 _04303 ECD_01008: ECD_01008 - KGG family protein, at 1,072,362 to 1,072,535 _01008 ECD_01009: ECD_01009 - pyrimidine permease, at 1,072,793 to 1,074,121 _01009 Position (kb) 1072 1073Strain fitness (log2 ratio) -2 -1 0 1at 1071.194 kb on - strand, within ECD_01006at 1071.194 kb on - strand, within ECD_01006at 1071.580 kb on - strand, within ECD_01007at 1071.580 kb on - strand, within ECD_01007at 1071.580 kb on - strand, within ECD_01007at 1071.618 kb on - strand, within ECD_01007at 1071.621 kb on - strand, within ECD_01007at 1071.679 kb on + strand, within ECD_01007at 1072.010 kb on - strandat 1072.170 kb on + strandat 1072.324 kb on + strand, within ECD_04303at 1072.340 kb on + strand, within ECD_04303at 1072.341 kb on - strand, within ECD_04303at 1072.628 kb on + strandat 1072.745 kb on + strandat 1072.745 kb on + strandat 1072.964 kb on - strand, within ECD_01009at 1073.164 kb on - strand, within ECD_01009at 1073.202 kb on + strand, within ECD_01009at 1073.202 kb on + strand, within ECD_01009at 1073.203 kb on - strand, within ECD_01009at 1073.203 kb on - strand, within ECD_01009at 1073.203 kb on - strand, within ECD_01009at 1073.280 kb on + strand, within ECD_01009at 1073.280 kb on + strand, within ECD_01009at 1073.281 kb on - strand, within ECD_01009at 1073.281 kb on - strand, within ECD_01009at 1073.331 kb on - strand, within ECD_01009

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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1,071,194 - ECD_01006 0.21 -1.5
1,071,194 - ECD_01006 0.21 -1.1
1,071,580 - ECD_01007 0.31 -0.5
1,071,580 - ECD_01007 0.31 +1.0
1,071,580 - ECD_01007 0.31 -0.7
1,071,618 - ECD_01007 0.38 +0.1
1,071,621 - ECD_01007 0.38 -0.5
1,071,679 + ECD_01007 0.48 +0.9
1,072,010 - +0.2
1,072,170 + +0.9
1,072,324 + ECD_04303 0.55 +0.3
1,072,340 + ECD_04303 0.62 +0.8
1,072,341 - ECD_04303 0.62 +0.4
1,072,628 + +0.4
1,072,745 + -0.3
1,072,745 + +0.6
1,072,964 - ECD_01009 0.13 -0.4
1,073,164 - ECD_01009 0.28 +0.6
1,073,202 + ECD_01009 0.31 -0.5
1,073,202 + ECD_01009 0.31 -2.3
1,073,203 - ECD_01009 0.31 +0.4
1,073,203 - ECD_01009 0.31 -0.1
1,073,203 - ECD_01009 0.31 +0.6
1,073,280 + ECD_01009 0.37 -0.2
1,073,280 + ECD_01009 0.37 +1.5
1,073,281 - ECD_01009 0.37 +0.1
1,073,281 - ECD_01009 0.37 -1.2
1,073,331 - ECD_01009 0.40 +0.2

Or see this region's nucleotide sequence