Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01006 and ECD_01007 are separated by 20 nucleotides ECD_01007 and ECD_04303 are separated by 203 nucleotides ECD_04303 and ECD_01008 overlap by 68 nucleotides ECD_01008 and ECD_01009 are separated by 257 nucleotides
ECD_01006: ECD_01006 - uncharacterized protein, at 1,071,145 to 1,071,372
_01006
ECD_01007: ECD_01007 - NAD(P)H:quinone oxidoreductase, at 1,071,393 to 1,071,989
_01007
ECD_04303: ECD_04303 - KGG family protein, at 1,072,193 to 1,072,429
_04303
ECD_01008: ECD_01008 - KGG family protein, at 1,072,362 to 1,072,535
_01008
ECD_01009: ECD_01009 - pyrimidine permease, at 1,072,793 to 1,074,121
_01009
Position (kb)
1072
1073 Strain fitness (log2 ratio)
-2
-1
0
1 at 1071.194 kb on - strand, within ECD_01006 at 1071.194 kb on - strand, within ECD_01006 at 1071.580 kb on - strand, within ECD_01007 at 1071.580 kb on - strand, within ECD_01007 at 1071.580 kb on - strand, within ECD_01007 at 1071.618 kb on - strand, within ECD_01007 at 1071.621 kb on - strand, within ECD_01007 at 1071.679 kb on + strand, within ECD_01007 at 1072.010 kb on - strand at 1072.170 kb on + strand at 1072.324 kb on + strand, within ECD_04303 at 1072.340 kb on + strand, within ECD_04303 at 1072.341 kb on - strand, within ECD_04303 at 1072.628 kb on + strand at 1072.745 kb on + strand at 1072.745 kb on + strand at 1072.964 kb on - strand, within ECD_01009 at 1073.164 kb on - strand, within ECD_01009 at 1073.202 kb on + strand, within ECD_01009 at 1073.202 kb on + strand, within ECD_01009 at 1073.203 kb on - strand, within ECD_01009 at 1073.203 kb on - strand, within ECD_01009 at 1073.203 kb on - strand, within ECD_01009 at 1073.280 kb on + strand, within ECD_01009 at 1073.280 kb on + strand, within ECD_01009 at 1073.281 kb on - strand, within ECD_01009 at 1073.281 kb on - strand, within ECD_01009 at 1073.331 kb on - strand, within ECD_01009
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 1,071,194 - ECD_01006 0.21 -1.5 1,071,194 - ECD_01006 0.21 -1.1 1,071,580 - ECD_01007 0.31 -0.5 1,071,580 - ECD_01007 0.31 +1.0 1,071,580 - ECD_01007 0.31 -0.7 1,071,618 - ECD_01007 0.38 +0.1 1,071,621 - ECD_01007 0.38 -0.5 1,071,679 + ECD_01007 0.48 +0.9 1,072,010 - +0.2 1,072,170 + +0.9 1,072,324 + ECD_04303 0.55 +0.3 1,072,340 + ECD_04303 0.62 +0.8 1,072,341 - ECD_04303 0.62 +0.4 1,072,628 + +0.4 1,072,745 + -0.3 1,072,745 + +0.6 1,072,964 - ECD_01009 0.13 -0.4 1,073,164 - ECD_01009 0.28 +0.6 1,073,202 + ECD_01009 0.31 -0.5 1,073,202 + ECD_01009 0.31 -2.3 1,073,203 - ECD_01009 0.31 +0.4 1,073,203 - ECD_01009 0.31 -0.1 1,073,203 - ECD_01009 0.31 +0.6 1,073,280 + ECD_01009 0.37 -0.2 1,073,280 + ECD_01009 0.37 +1.5 1,073,281 - ECD_01009 0.37 +0.1 1,073,281 - ECD_01009 0.37 -1.2 1,073,331 - ECD_01009 0.40 +0.2
Or see this region's nucleotide sequence