Strain Fitness in Escherichia coli BL21 around ECD_04128

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04127 and ECD_04128 overlap by 1 nucleotidesECD_04128 and ECD_04129 are separated by 160 nucleotides ECD_04127: ECD_04127 - lipopolysaccharide export ABC permease, at 4,397,810 to 4,398,910 _04127 ECD_04128: ECD_04128 - lipopolysaccharide export ABC permease, at 4,398,910 to 4,399,992 _04128 ECD_04129: ECD_04129 - DUF853 family protein with NTPase fold, at 4,400,153 to 4,401,655 _04129 Position (kb) 4398 4399 4400Strain fitness (log2 ratio) -1 0 1 2at 4399.958 kb on + strandat 4400.154 kb on + strandat 4400.154 kb on + strandat 4400.155 kb on - strandat 4400.155 kb on - strandat 4400.155 kb on - strandat 4400.155 kb on - strandat 4400.195 kb on + strandat 4400.294 kb on - strandat 4400.403 kb on + strand, within ECD_04129at 4400.433 kb on + strand, within ECD_04129at 4400.433 kb on + strand, within ECD_04129at 4400.434 kb on - strand, within ECD_04129at 4400.434 kb on - strand, within ECD_04129at 4400.471 kb on - strand, within ECD_04129at 4400.789 kb on - strand, within ECD_04129at 4400.822 kb on + strand, within ECD_04129at 4400.916 kb on + strand, within ECD_04129at 4400.917 kb on - strand, within ECD_04129

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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4,399,958 + -0.8
4,400,154 + +0.2
4,400,154 + +0.6
4,400,155 - +1.2
4,400,155 - +0.6
4,400,155 - -0.3
4,400,155 - -0.5
4,400,195 + +0.3
4,400,294 - +0.4
4,400,403 + ECD_04129 0.17 +0.3
4,400,433 + ECD_04129 0.19 -0.1
4,400,433 + ECD_04129 0.19 -0.4
4,400,434 - ECD_04129 0.19 +0.5
4,400,434 - ECD_04129 0.19 -0.8
4,400,471 - ECD_04129 0.21 +0.8
4,400,789 - ECD_04129 0.42 +1.0
4,400,822 + ECD_04129 0.45 +0.2
4,400,916 + ECD_04129 0.51 +2.4
4,400,917 - ECD_04129 0.51 +0.3

Or see this region's nucleotide sequence