Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02997 and ECD_02998 are separated by 22 nucleotides ECD_02998 and ECD_02999 are separated by 10 nucleotides ECD_02999 and ECD_03000 overlap by 11 nucleotides ECD_03000 and ECD_03001 are separated by 17 nucleotides
ECD_02997: ECD_02997 - tagatose 6-phosphate aldolase 1, kbaZ subunit, at 3,145,107 to 3,146,387
_02997
ECD_02998: ECD_02998 - N-acetylgalactosamine-specific enzyme IIB component of PTS, at 3,146,410 to 3,146,883
_02998
ECD_02999: ECD_02999 - N-acetylgalactosamine-specific enzyme IIC component of PTS, at 3,146,894 to 3,147,673
_02999
ECD_03000: ECD_03000 - PTS system, N-acetylgalactosamine-specific IID component, at 3,147,663 to 3,148,541
_03000
ECD_03001: ECD_03001 - putative phosphotransferase system enzyme subunit (N-acetyl-galactosamine/galactosamine PTS system enzyme IIA component), at 3,148,559 to 3,148,993
_03001
Position (kb)
3146
3147
3148 Strain fitness (log2 ratio)
-1
0
1
2 at 3146.095 kb on - strand, within ECD_02997 at 3146.150 kb on + strand, within ECD_02997 at 3146.150 kb on + strand, within ECD_02997 at 3146.150 kb on + strand, within ECD_02997 at 3146.150 kb on + strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.151 kb on - strand, within ECD_02997 at 3146.172 kb on + strand, within ECD_02997 at 3146.218 kb on + strand, within ECD_02997 at 3146.222 kb on + strand, within ECD_02997 at 3146.222 kb on + strand, within ECD_02997 at 3146.280 kb on + strand at 3146.281 kb on - strand at 3146.418 kb on + strand at 3146.419 kb on - strand at 3146.582 kb on + strand, within ECD_02998 at 3146.583 kb on - strand, within ECD_02998 at 3146.728 kb on - strand, within ECD_02998 at 3146.734 kb on + strand, within ECD_02998 at 3146.876 kb on + strand at 3146.977 kb on + strand, within ECD_02999 at 3146.977 kb on + strand, within ECD_02999 at 3146.977 kb on + strand, within ECD_02999 at 3146.977 kb on + strand, within ECD_02999 at 3146.978 kb on - strand, within ECD_02999 at 3146.978 kb on - strand, within ECD_02999 at 3146.978 kb on - strand, within ECD_02999 at 3146.978 kb on - strand, within ECD_02999 at 3146.978 kb on - strand, within ECD_02999 at 3147.127 kb on + strand, within ECD_02999 at 3147.211 kb on - strand, within ECD_02999 at 3147.223 kb on + strand, within ECD_02999 at 3147.223 kb on + strand, within ECD_02999 at 3147.224 kb on - strand, within ECD_02999 at 3147.224 kb on - strand, within ECD_02999 at 3147.315 kb on - strand, within ECD_02999 at 3147.368 kb on - strand, within ECD_02999 at 3147.371 kb on + strand, within ECD_02999 at 3147.372 kb on - strand, within ECD_02999 at 3147.372 kb on - strand, within ECD_02999 at 3147.372 kb on - strand, within ECD_02999 at 3147.372 kb on - strand, within ECD_02999 at 3147.372 kb on - strand, within ECD_02999 at 3147.516 kb on - strand, within ECD_02999 at 3147.613 kb on + strand at 3147.783 kb on - strand, within ECD_03000 at 3147.814 kb on + strand, within ECD_03000 at 3147.827 kb on + strand, within ECD_03000 at 3147.839 kb on + strand, within ECD_03000 at 3147.839 kb on + strand, within ECD_03000 at 3147.839 kb on + strand, within ECD_03000 at 3147.840 kb on - strand, within ECD_03000 at 3147.896 kb on + strand, within ECD_03000 at 3147.900 kb on - strand, within ECD_03000 at 3147.900 kb on - strand, within ECD_03000 at 3148.004 kb on + strand, within ECD_03000 at 3148.004 kb on + strand, within ECD_03000 at 3148.005 kb on - strand, within ECD_03000 at 3148.005 kb on - strand, within ECD_03000 at 3148.093 kb on + strand, within ECD_03000 at 3148.184 kb on - strand, within ECD_03000 at 3148.215 kb on + strand, within ECD_03000 at 3148.215 kb on + strand, within ECD_03000 at 3148.216 kb on - strand, within ECD_03000 at 3148.221 kb on + strand, within ECD_03000 at 3148.262 kb on + strand, within ECD_03000 at 3148.306 kb on + strand, within ECD_03000 at 3148.329 kb on + strand, within ECD_03000 at 3148.329 kb on + strand, within ECD_03000 at 3148.329 kb on + strand, within ECD_03000 at 3148.329 kb on + strand, within ECD_03000 at 3148.329 kb on + strand, within ECD_03000 at 3148.330 kb on - strand, within ECD_03000 at 3148.330 kb on - strand, within ECD_03000 at 3148.330 kb on - strand, within ECD_03000 at 3148.330 kb on - strand, within ECD_03000 at 3148.339 kb on + strand, within ECD_03000 at 3148.379 kb on + strand, within ECD_03000 at 3148.379 kb on + strand, within ECD_03000 at 3148.385 kb on - strand, within ECD_03000 at 3148.496 kb on + strand at 3148.496 kb on + strand at 3148.544 kb on - strand at 3148.556 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 3,146,095 - ECD_02997 0.77 -1.3 3,146,150 + ECD_02997 0.81 -0.9 3,146,150 + ECD_02997 0.81 +0.4 3,146,150 + ECD_02997 0.81 +0.4 3,146,150 + ECD_02997 0.81 +0.7 3,146,151 - ECD_02997 0.81 +0.4 3,146,151 - ECD_02997 0.81 -0.4 3,146,151 - ECD_02997 0.81 +1.9 3,146,151 - ECD_02997 0.81 -0.2 3,146,151 - ECD_02997 0.81 +0.4 3,146,151 - ECD_02997 0.81 +1.2 3,146,151 - ECD_02997 0.81 +0.9 3,146,151 - ECD_02997 0.81 +0.4 3,146,151 - ECD_02997 0.81 -0.0 3,146,172 + ECD_02997 0.83 +0.7 3,146,218 + ECD_02997 0.87 -1.4 3,146,222 + ECD_02997 0.87 -0.4 3,146,222 + ECD_02997 0.87 -0.2 3,146,280 + -0.1 3,146,281 - +0.4 3,146,418 + -1.0 3,146,419 - +0.1 3,146,582 + ECD_02998 0.36 +0.1 3,146,583 - ECD_02998 0.36 -1.2 3,146,728 - ECD_02998 0.67 -0.5 3,146,734 + ECD_02998 0.68 +0.6 3,146,876 + +0.3 3,146,977 + ECD_02999 0.11 +0.4 3,146,977 + ECD_02999 0.11 -0.3 3,146,977 + ECD_02999 0.11 +0.2 3,146,977 + ECD_02999 0.11 +0.3 3,146,978 - ECD_02999 0.11 -0.9 3,146,978 - ECD_02999 0.11 +2.0 3,146,978 - ECD_02999 0.11 +0.8 3,146,978 - ECD_02999 0.11 +0.9 3,146,978 - ECD_02999 0.11 -0.6 3,147,127 + ECD_02999 0.30 +0.6 3,147,211 - ECD_02999 0.41 -0.5 3,147,223 + ECD_02999 0.42 +0.0 3,147,223 + ECD_02999 0.42 -0.3 3,147,224 - ECD_02999 0.42 -0.2 3,147,224 - ECD_02999 0.42 +0.8 3,147,315 - ECD_02999 0.54 -0.8 3,147,368 - ECD_02999 0.61 +0.6 3,147,371 + ECD_02999 0.61 +0.8 3,147,372 - ECD_02999 0.61 -0.3 3,147,372 - ECD_02999 0.61 -0.7 3,147,372 - ECD_02999 0.61 -1.7 3,147,372 - ECD_02999 0.61 +0.2 3,147,372 - ECD_02999 0.61 +0.8 3,147,516 - ECD_02999 0.80 +0.5 3,147,613 + +0.2 3,147,783 - ECD_03000 0.14 +0.8 3,147,814 + ECD_03000 0.17 -0.1 3,147,827 + ECD_03000 0.19 -0.0 3,147,839 + ECD_03000 0.20 +0.2 3,147,839 + ECD_03000 0.20 -1.0 3,147,839 + ECD_03000 0.20 +0.4 3,147,840 - ECD_03000 0.20 -0.4 3,147,896 + ECD_03000 0.27 +0.4 3,147,900 - ECD_03000 0.27 -1.7 3,147,900 - ECD_03000 0.27 -0.1 3,148,004 + ECD_03000 0.39 -1.0 3,148,004 + ECD_03000 0.39 +0.8 3,148,005 - ECD_03000 0.39 +0.7 3,148,005 - ECD_03000 0.39 +0.6 3,148,093 + ECD_03000 0.49 -0.3 3,148,184 - ECD_03000 0.59 +0.5 3,148,215 + ECD_03000 0.63 -0.1 3,148,215 + ECD_03000 0.63 +1.4 3,148,216 - ECD_03000 0.63 +0.6 3,148,221 + ECD_03000 0.63 +0.2 3,148,262 + ECD_03000 0.68 +1.4 3,148,306 + ECD_03000 0.73 +0.8 3,148,329 + ECD_03000 0.76 -0.2 3,148,329 + ECD_03000 0.76 +0.7 3,148,329 + ECD_03000 0.76 -0.0 3,148,329 + ECD_03000 0.76 -0.2 3,148,329 + ECD_03000 0.76 -0.7 3,148,330 - ECD_03000 0.76 -0.1 3,148,330 - ECD_03000 0.76 +1.1 3,148,330 - ECD_03000 0.76 -1.2 3,148,330 - ECD_03000 0.76 -0.1 3,148,339 + ECD_03000 0.77 +0.3 3,148,379 + ECD_03000 0.81 -0.2 3,148,379 + ECD_03000 0.81 -0.7 3,148,385 - ECD_03000 0.82 +0.2 3,148,496 + +0.2 3,148,496 + -1.5 3,148,544 - +1.0 3,148,556 + +0.2
Or see this region's nucleotide sequence