Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02865 and ECD_02866 are separated by 122 nucleotides ECD_02866 and ECD_02867 are separated by 12 nucleotides ECD_02867 and ECD_02868 overlap by 8 nucleotides ECD_02868 and ECD_02869 overlap by 8 nucleotides ECD_02869 and ECD_02870 overlap by 1 nucleotides
ECD_02865: ECD_02865 - putative S-transferase, at 3,006,161 to 3,007,027
_02865
ECD_02866: ECD_02866 - hydrogenase 2 accessory protein, at 3,007,150 to 3,007,398
_02866
ECD_02867: ECD_02867 - protein involved with the maturation of hydrogenases 1 and 2, at 3,007,411 to 3,007,752
_02867
ECD_02868: ECD_02868 - hydrogenase 2-specific chaperone, at 3,007,745 to 3,008,233
_02868
ECD_02869: ECD_02869 - maturation protease for hydrogenase 2, at 3,008,226 to 3,008,720
_02869
ECD_02870: ECD_02870 - hydrogenase 2, large subunit, at 3,008,720 to 3,010,423
_02870
Position (kb)
3007
3008 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3006.481 kb on + strand, within ECD_02865 at 3006.487 kb on + strand, within ECD_02865 at 3006.488 kb on - strand, within ECD_02865 at 3006.530 kb on + strand, within ECD_02865 at 3006.531 kb on - strand, within ECD_02865 at 3006.733 kb on + strand, within ECD_02865 at 3006.752 kb on - strand, within ECD_02865 at 3006.752 kb on - strand, within ECD_02865 at 3006.752 kb on - strand, within ECD_02865 at 3006.752 kb on - strand, within ECD_02865 at 3006.773 kb on + strand, within ECD_02865 at 3006.773 kb on + strand, within ECD_02865 at 3006.774 kb on - strand, within ECD_02865 at 3006.876 kb on + strand, within ECD_02865 at 3006.876 kb on + strand, within ECD_02865 at 3006.876 kb on + strand, within ECD_02865 at 3006.876 kb on + strand, within ECD_02865 at 3006.877 kb on - strand, within ECD_02865 at 3006.897 kb on + strand, within ECD_02865 at 3006.897 kb on + strand, within ECD_02865 at 3006.897 kb on + strand, within ECD_02865 at 3006.898 kb on - strand, within ECD_02865 at 3007.012 kb on + strand at 3007.025 kb on + strand at 3007.145 kb on - strand at 3007.145 kb on - strand at 3007.193 kb on - strand, within ECD_02866 at 3007.193 kb on - strand, within ECD_02866 at 3007.327 kb on + strand, within ECD_02866 at 3007.327 kb on + strand, within ECD_02866 at 3007.327 kb on + strand, within ECD_02866 at 3007.328 kb on - strand, within ECD_02866 at 3007.328 kb on - strand, within ECD_02866 at 3007.328 kb on - strand, within ECD_02866 at 3007.328 kb on - strand, within ECD_02866 at 3007.328 kb on - strand, within ECD_02866 at 3007.353 kb on + strand, within ECD_02866 at 3007.353 kb on + strand, within ECD_02866 at 3007.354 kb on - strand, within ECD_02866 at 3007.393 kb on - strand at 3007.393 kb on - strand at 3007.556 kb on + strand, within ECD_02867 at 3007.557 kb on - strand, within ECD_02867 at 3007.567 kb on + strand, within ECD_02867 at 3007.567 kb on + strand, within ECD_02867 at 3007.568 kb on - strand, within ECD_02867 at 3007.568 kb on - strand, within ECD_02867 at 3007.568 kb on - strand, within ECD_02867 at 3007.802 kb on + strand, within ECD_02868 at 3007.802 kb on + strand, within ECD_02868 at 3007.803 kb on - strand, within ECD_02868 at 3007.803 kb on - strand, within ECD_02868 at 3007.921 kb on - strand, within ECD_02868 at 3007.960 kb on + strand, within ECD_02868 at 3007.969 kb on - strand, within ECD_02868 at 3007.969 kb on - strand, within ECD_02868 at 3008.112 kb on + strand, within ECD_02868 at 3008.112 kb on + strand, within ECD_02868 at 3008.113 kb on - strand, within ECD_02868 at 3008.113 kb on - strand, within ECD_02868 at 3008.187 kb on - strand at 3008.220 kb on - strand at 3008.543 kb on + strand, within ECD_02869 at 3008.632 kb on + strand, within ECD_02869 at 3008.633 kb on - strand, within ECD_02869 at 3008.633 kb on - strand, within ECD_02869 at 3008.714 kb on + strand at 3008.715 kb on - strand at 3008.721 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 3,006,481 + ECD_02865 0.37 +0.1 3,006,487 + ECD_02865 0.38 -0.2 3,006,488 - ECD_02865 0.38 -0.3 3,006,530 + ECD_02865 0.43 +0.0 3,006,531 - ECD_02865 0.43 -0.3 3,006,733 + ECD_02865 0.66 +0.4 3,006,752 - ECD_02865 0.68 +0.1 3,006,752 - ECD_02865 0.68 -0.3 3,006,752 - ECD_02865 0.68 -0.4 3,006,752 - ECD_02865 0.68 +0.7 3,006,773 + ECD_02865 0.71 -0.9 3,006,773 + ECD_02865 0.71 +0.7 3,006,774 - ECD_02865 0.71 -0.3 3,006,876 + ECD_02865 0.82 +0.7 3,006,876 + ECD_02865 0.82 +1.5 3,006,876 + ECD_02865 0.82 +0.1 3,006,876 + ECD_02865 0.82 +1.4 3,006,877 - ECD_02865 0.83 +0.5 3,006,897 + ECD_02865 0.85 +1.6 3,006,897 + ECD_02865 0.85 +0.1 3,006,897 + ECD_02865 0.85 -0.8 3,006,898 - ECD_02865 0.85 -0.3 3,007,012 + -0.3 3,007,025 + -0.2 3,007,145 - -1.6 3,007,145 - -0.1 3,007,193 - ECD_02866 0.17 -0.3 3,007,193 - ECD_02866 0.17 +0.8 3,007,327 + ECD_02866 0.71 -0.3 3,007,327 + ECD_02866 0.71 -0.3 3,007,327 + ECD_02866 0.71 +1.1 3,007,328 - ECD_02866 0.71 +2.4 3,007,328 - ECD_02866 0.71 -1.9 3,007,328 - ECD_02866 0.71 -0.1 3,007,328 - ECD_02866 0.71 +1.7 3,007,328 - ECD_02866 0.71 +0.4 3,007,353 + ECD_02866 0.82 +0.4 3,007,353 + ECD_02866 0.82 +0.6 3,007,354 - ECD_02866 0.82 -1.5 3,007,393 - +2.2 3,007,393 - +0.8 3,007,556 + ECD_02867 0.42 -0.4 3,007,557 - ECD_02867 0.43 +0.7 3,007,567 + ECD_02867 0.46 +0.4 3,007,567 + ECD_02867 0.46 +0.1 3,007,568 - ECD_02867 0.46 +1.4 3,007,568 - ECD_02867 0.46 +0.1 3,007,568 - ECD_02867 0.46 +0.9 3,007,802 + ECD_02868 0.12 -1.3 3,007,802 + ECD_02868 0.12 +1.4 3,007,803 - ECD_02868 0.12 -0.6 3,007,803 - ECD_02868 0.12 +0.7 3,007,921 - ECD_02868 0.36 +0.4 3,007,960 + ECD_02868 0.44 -0.8 3,007,969 - ECD_02868 0.46 +1.0 3,007,969 - ECD_02868 0.46 +0.1 3,008,112 + ECD_02868 0.75 -0.3 3,008,112 + ECD_02868 0.75 +0.3 3,008,113 - ECD_02868 0.75 +0.4 3,008,113 - ECD_02868 0.75 +0.0 3,008,187 - +0.4 3,008,220 - -1.6 3,008,543 + ECD_02869 0.64 -1.6 3,008,632 + ECD_02869 0.82 +1.1 3,008,633 - ECD_02869 0.82 +0.2 3,008,633 - ECD_02869 0.82 -0.4 3,008,714 + +0.1 3,008,715 - +0.8 3,008,721 + -0.1
Or see this region's nucleotide sequence