Strain Fitness in Escherichia coli BL21 around ECD_02867

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02865 and ECD_02866 are separated by 122 nucleotidesECD_02866 and ECD_02867 are separated by 12 nucleotidesECD_02867 and ECD_02868 overlap by 8 nucleotidesECD_02868 and ECD_02869 overlap by 8 nucleotidesECD_02869 and ECD_02870 overlap by 1 nucleotides ECD_02865: ECD_02865 - putative S-transferase, at 3,006,161 to 3,007,027 _02865 ECD_02866: ECD_02866 - hydrogenase 2 accessory protein, at 3,007,150 to 3,007,398 _02866 ECD_02867: ECD_02867 - protein involved with the maturation of hydrogenases 1 and 2, at 3,007,411 to 3,007,752 _02867 ECD_02868: ECD_02868 - hydrogenase 2-specific chaperone, at 3,007,745 to 3,008,233 _02868 ECD_02869: ECD_02869 - maturation protease for hydrogenase 2, at 3,008,226 to 3,008,720 _02869 ECD_02870: ECD_02870 - hydrogenase 2, large subunit, at 3,008,720 to 3,010,423 _02870 Position (kb) 3007 3008Strain fitness (log2 ratio) -2 -1 0 1 2at 3006.481 kb on + strand, within ECD_02865at 3006.487 kb on + strand, within ECD_02865at 3006.488 kb on - strand, within ECD_02865at 3006.530 kb on + strand, within ECD_02865at 3006.531 kb on - strand, within ECD_02865at 3006.733 kb on + strand, within ECD_02865at 3006.752 kb on - strand, within ECD_02865at 3006.752 kb on - strand, within ECD_02865at 3006.752 kb on - strand, within ECD_02865at 3006.752 kb on - strand, within ECD_02865at 3006.773 kb on + strand, within ECD_02865at 3006.773 kb on + strand, within ECD_02865at 3006.774 kb on - strand, within ECD_02865at 3006.876 kb on + strand, within ECD_02865at 3006.876 kb on + strand, within ECD_02865at 3006.876 kb on + strand, within ECD_02865at 3006.876 kb on + strand, within ECD_02865at 3006.877 kb on - strand, within ECD_02865at 3006.897 kb on + strand, within ECD_02865at 3006.897 kb on + strand, within ECD_02865at 3006.897 kb on + strand, within ECD_02865at 3006.898 kb on - strand, within ECD_02865at 3007.012 kb on + strandat 3007.025 kb on + strandat 3007.145 kb on - strandat 3007.145 kb on - strandat 3007.193 kb on - strand, within ECD_02866at 3007.193 kb on - strand, within ECD_02866at 3007.327 kb on + strand, within ECD_02866at 3007.327 kb on + strand, within ECD_02866at 3007.327 kb on + strand, within ECD_02866at 3007.328 kb on - strand, within ECD_02866at 3007.328 kb on - strand, within ECD_02866at 3007.328 kb on - strand, within ECD_02866at 3007.328 kb on - strand, within ECD_02866at 3007.328 kb on - strand, within ECD_02866at 3007.353 kb on + strand, within ECD_02866at 3007.353 kb on + strand, within ECD_02866at 3007.354 kb on - strand, within ECD_02866at 3007.393 kb on - strandat 3007.393 kb on - strandat 3007.556 kb on + strand, within ECD_02867at 3007.557 kb on - strand, within ECD_02867at 3007.567 kb on + strand, within ECD_02867at 3007.567 kb on + strand, within ECD_02867at 3007.568 kb on - strand, within ECD_02867at 3007.568 kb on - strand, within ECD_02867at 3007.568 kb on - strand, within ECD_02867at 3007.802 kb on + strand, within ECD_02868at 3007.802 kb on + strand, within ECD_02868at 3007.803 kb on - strand, within ECD_02868at 3007.803 kb on - strand, within ECD_02868at 3007.921 kb on - strand, within ECD_02868at 3007.960 kb on + strand, within ECD_02868at 3007.969 kb on - strand, within ECD_02868at 3007.969 kb on - strand, within ECD_02868at 3008.112 kb on + strand, within ECD_02868at 3008.112 kb on + strand, within ECD_02868at 3008.113 kb on - strand, within ECD_02868at 3008.113 kb on - strand, within ECD_02868at 3008.187 kb on - strandat 3008.220 kb on - strandat 3008.543 kb on + strand, within ECD_02869at 3008.632 kb on + strand, within ECD_02869at 3008.633 kb on - strand, within ECD_02869at 3008.633 kb on - strand, within ECD_02869at 3008.714 kb on + strandat 3008.715 kb on - strandat 3008.721 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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3,006,481 + ECD_02865 0.37 +0.1
3,006,487 + ECD_02865 0.38 -0.2
3,006,488 - ECD_02865 0.38 -0.3
3,006,530 + ECD_02865 0.43 +0.0
3,006,531 - ECD_02865 0.43 -0.3
3,006,733 + ECD_02865 0.66 +0.4
3,006,752 - ECD_02865 0.68 +0.1
3,006,752 - ECD_02865 0.68 -0.3
3,006,752 - ECD_02865 0.68 -0.4
3,006,752 - ECD_02865 0.68 +0.7
3,006,773 + ECD_02865 0.71 -0.9
3,006,773 + ECD_02865 0.71 +0.7
3,006,774 - ECD_02865 0.71 -0.3
3,006,876 + ECD_02865 0.82 +0.7
3,006,876 + ECD_02865 0.82 +1.5
3,006,876 + ECD_02865 0.82 +0.1
3,006,876 + ECD_02865 0.82 +1.4
3,006,877 - ECD_02865 0.83 +0.5
3,006,897 + ECD_02865 0.85 +1.6
3,006,897 + ECD_02865 0.85 +0.1
3,006,897 + ECD_02865 0.85 -0.8
3,006,898 - ECD_02865 0.85 -0.3
3,007,012 + -0.3
3,007,025 + -0.2
3,007,145 - -1.6
3,007,145 - -0.1
3,007,193 - ECD_02866 0.17 -0.3
3,007,193 - ECD_02866 0.17 +0.8
3,007,327 + ECD_02866 0.71 -0.3
3,007,327 + ECD_02866 0.71 -0.3
3,007,327 + ECD_02866 0.71 +1.1
3,007,328 - ECD_02866 0.71 +2.4
3,007,328 - ECD_02866 0.71 -1.9
3,007,328 - ECD_02866 0.71 -0.1
3,007,328 - ECD_02866 0.71 +1.7
3,007,328 - ECD_02866 0.71 +0.4
3,007,353 + ECD_02866 0.82 +0.4
3,007,353 + ECD_02866 0.82 +0.6
3,007,354 - ECD_02866 0.82 -1.5
3,007,393 - +2.2
3,007,393 - +0.8
3,007,556 + ECD_02867 0.42 -0.4
3,007,557 - ECD_02867 0.43 +0.7
3,007,567 + ECD_02867 0.46 +0.4
3,007,567 + ECD_02867 0.46 +0.1
3,007,568 - ECD_02867 0.46 +1.4
3,007,568 - ECD_02867 0.46 +0.1
3,007,568 - ECD_02867 0.46 +0.9
3,007,802 + ECD_02868 0.12 -1.3
3,007,802 + ECD_02868 0.12 +1.4
3,007,803 - ECD_02868 0.12 -0.6
3,007,803 - ECD_02868 0.12 +0.7
3,007,921 - ECD_02868 0.36 +0.4
3,007,960 + ECD_02868 0.44 -0.8
3,007,969 - ECD_02868 0.46 +1.0
3,007,969 - ECD_02868 0.46 +0.1
3,008,112 + ECD_02868 0.75 -0.3
3,008,112 + ECD_02868 0.75 +0.3
3,008,113 - ECD_02868 0.75 +0.4
3,008,113 - ECD_02868 0.75 +0.0
3,008,187 - +0.4
3,008,220 - -1.6
3,008,543 + ECD_02869 0.64 -1.6
3,008,632 + ECD_02869 0.82 +1.1
3,008,633 - ECD_02869 0.82 +0.2
3,008,633 - ECD_02869 0.82 -0.4
3,008,714 + +0.1
3,008,715 - +0.8
3,008,721 + -0.1

Or see this region's nucleotide sequence