Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02428 and ECD_02429 are separated by 159 nucleotides ECD_02429 and ECD_02430 are separated by 135 nucleotides
ECD_02428: ECD_02428 - putative 3-phenylpropionic transporter, at 2,532,512 to 2,533,651
_02428
ECD_02429: ECD_02429 - hca operon transcriptional regulator, at 2,533,811 to 2,534,701
_02429
ECD_02430: ECD_02430 - 3-phenylpropionate dioxygenase, large (alpha) subunit, at 2,534,837 to 2,536,198
_02430
Position (kb)
2533
2534
2535 Strain fitness (log2 ratio)
-2
-1
0
1 at 2532.860 kb on - strand, within ECD_02428 at 2532.860 kb on - strand, within ECD_02428 at 2532.860 kb on - strand, within ECD_02428 at 2532.930 kb on + strand, within ECD_02428 at 2533.196 kb on - strand, within ECD_02428 at 2533.196 kb on - strand, within ECD_02428 at 2533.343 kb on - strand, within ECD_02428 at 2533.373 kb on + strand, within ECD_02428 at 2533.374 kb on - strand, within ECD_02428 at 2533.746 kb on + strand at 2533.801 kb on + strand at 2533.812 kb on + strand at 2533.902 kb on - strand, within ECD_02429 at 2533.971 kb on + strand, within ECD_02429 at 2533.971 kb on + strand, within ECD_02429 at 2534.029 kb on + strand, within ECD_02429 at 2534.181 kb on - strand, within ECD_02429 at 2534.181 kb on - strand, within ECD_02429 at 2534.325 kb on - strand, within ECD_02429 at 2534.391 kb on - strand, within ECD_02429 at 2534.607 kb on - strand, within ECD_02429 at 2534.694 kb on - strand at 2534.694 kb on - strand at 2534.809 kb on + strand at 2534.809 kb on + strand at 2534.816 kb on + strand at 2534.837 kb on - strand at 2534.864 kb on + strand at 2534.906 kb on - strand at 2534.906 kb on - strand at 2534.927 kb on + strand at 2534.928 kb on - strand at 2534.967 kb on + strand at 2535.020 kb on + strand, within ECD_02430 at 2535.020 kb on + strand, within ECD_02430 at 2535.021 kb on - strand, within ECD_02430 at 2535.021 kb on - strand, within ECD_02430 at 2535.021 kb on - strand, within ECD_02430 at 2535.145 kb on + strand, within ECD_02430 at 2535.145 kb on + strand, within ECD_02430 at 2535.278 kb on + strand, within ECD_02430 at 2535.278 kb on + strand, within ECD_02430 at 2535.278 kb on + strand, within ECD_02430 at 2535.279 kb on - strand, within ECD_02430 at 2535.280 kb on + strand, within ECD_02430 at 2535.280 kb on + strand, within ECD_02430 at 2535.281 kb on - strand, within ECD_02430 at 2535.281 kb on - strand, within ECD_02430 at 2535.281 kb on - strand, within ECD_02430 at 2535.507 kb on + strand, within ECD_02430 at 2535.508 kb on - strand, within ECD_02430 at 2535.508 kb on - strand, within ECD_02430 at 2535.635 kb on - strand, within ECD_02430
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 2,532,860 - ECD_02428 0.31 +0.7 2,532,860 - ECD_02428 0.31 -0.2 2,532,860 - ECD_02428 0.31 -0.3 2,532,930 + ECD_02428 0.37 +0.9 2,533,196 - ECD_02428 0.60 +0.5 2,533,196 - ECD_02428 0.60 -0.2 2,533,343 - ECD_02428 0.73 +1.2 2,533,373 + ECD_02428 0.76 +1.0 2,533,374 - ECD_02428 0.76 -0.3 2,533,746 + -0.0 2,533,801 + +0.1 2,533,812 + +0.5 2,533,902 - ECD_02429 0.10 -0.6 2,533,971 + ECD_02429 0.18 +1.5 2,533,971 + ECD_02429 0.18 +0.5 2,534,029 + ECD_02429 0.24 +1.6 2,534,181 - ECD_02429 0.42 -0.3 2,534,181 - ECD_02429 0.42 +0.5 2,534,325 - ECD_02429 0.58 -1.0 2,534,391 - ECD_02429 0.65 -0.3 2,534,607 - ECD_02429 0.89 +0.5 2,534,694 - +0.1 2,534,694 - +0.2 2,534,809 + +0.1 2,534,809 + -0.2 2,534,816 + -0.2 2,534,837 - -2.2 2,534,864 + +0.1 2,534,906 - +0.3 2,534,906 - +0.1 2,534,927 + +0.2 2,534,928 - -0.1 2,534,967 + -0.5 2,535,020 + ECD_02430 0.13 -0.4 2,535,020 + ECD_02430 0.13 -0.5 2,535,021 - ECD_02430 0.14 -0.0 2,535,021 - ECD_02430 0.14 -0.3 2,535,021 - ECD_02430 0.14 -1.4 2,535,145 + ECD_02430 0.23 -0.5 2,535,145 + ECD_02430 0.23 +1.0 2,535,278 + ECD_02430 0.32 -0.3 2,535,278 + ECD_02430 0.32 -0.6 2,535,278 + ECD_02430 0.32 +0.1 2,535,279 - ECD_02430 0.32 +0.8 2,535,280 + ECD_02430 0.33 +0.4 2,535,280 + ECD_02430 0.33 +0.6 2,535,281 - ECD_02430 0.33 +0.0 2,535,281 - ECD_02430 0.33 -0.5 2,535,281 - ECD_02430 0.33 -0.1 2,535,507 + ECD_02430 0.49 -0.5 2,535,508 - ECD_02430 0.49 -0.2 2,535,508 - ECD_02430 0.49 -0.8 2,535,635 - ECD_02430 0.59 -0.4
Or see this region's nucleotide sequence