Strain Fitness in Escherichia coli BL21 around ECD_02429

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02428 and ECD_02429 are separated by 159 nucleotidesECD_02429 and ECD_02430 are separated by 135 nucleotides ECD_02428: ECD_02428 - putative 3-phenylpropionic transporter, at 2,532,512 to 2,533,651 _02428 ECD_02429: ECD_02429 - hca operon transcriptional regulator, at 2,533,811 to 2,534,701 _02429 ECD_02430: ECD_02430 - 3-phenylpropionate dioxygenase, large (alpha) subunit, at 2,534,837 to 2,536,198 _02430 Position (kb) 2533 2534 2535Strain fitness (log2 ratio) -2 -1 0 1at 2532.860 kb on - strand, within ECD_02428at 2532.860 kb on - strand, within ECD_02428at 2532.860 kb on - strand, within ECD_02428at 2532.930 kb on + strand, within ECD_02428at 2533.196 kb on - strand, within ECD_02428at 2533.196 kb on - strand, within ECD_02428at 2533.343 kb on - strand, within ECD_02428at 2533.373 kb on + strand, within ECD_02428at 2533.374 kb on - strand, within ECD_02428at 2533.746 kb on + strandat 2533.801 kb on + strandat 2533.812 kb on + strandat 2533.902 kb on - strand, within ECD_02429at 2533.971 kb on + strand, within ECD_02429at 2533.971 kb on + strand, within ECD_02429at 2534.029 kb on + strand, within ECD_02429at 2534.181 kb on - strand, within ECD_02429at 2534.181 kb on - strand, within ECD_02429at 2534.325 kb on - strand, within ECD_02429at 2534.391 kb on - strand, within ECD_02429at 2534.607 kb on - strand, within ECD_02429at 2534.694 kb on - strandat 2534.694 kb on - strandat 2534.809 kb on + strandat 2534.809 kb on + strandat 2534.816 kb on + strandat 2534.837 kb on - strandat 2534.864 kb on + strandat 2534.906 kb on - strandat 2534.906 kb on - strandat 2534.927 kb on + strandat 2534.928 kb on - strandat 2534.967 kb on + strandat 2535.020 kb on + strand, within ECD_02430at 2535.020 kb on + strand, within ECD_02430at 2535.021 kb on - strand, within ECD_02430at 2535.021 kb on - strand, within ECD_02430at 2535.021 kb on - strand, within ECD_02430at 2535.145 kb on + strand, within ECD_02430at 2535.145 kb on + strand, within ECD_02430at 2535.278 kb on + strand, within ECD_02430at 2535.278 kb on + strand, within ECD_02430at 2535.278 kb on + strand, within ECD_02430at 2535.279 kb on - strand, within ECD_02430at 2535.280 kb on + strand, within ECD_02430at 2535.280 kb on + strand, within ECD_02430at 2535.281 kb on - strand, within ECD_02430at 2535.281 kb on - strand, within ECD_02430at 2535.281 kb on - strand, within ECD_02430at 2535.507 kb on + strand, within ECD_02430at 2535.508 kb on - strand, within ECD_02430at 2535.508 kb on - strand, within ECD_02430at 2535.635 kb on - strand, within ECD_02430

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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2,532,860 - ECD_02428 0.31 +0.7
2,532,860 - ECD_02428 0.31 -0.2
2,532,860 - ECD_02428 0.31 -0.3
2,532,930 + ECD_02428 0.37 +0.9
2,533,196 - ECD_02428 0.60 +0.5
2,533,196 - ECD_02428 0.60 -0.2
2,533,343 - ECD_02428 0.73 +1.2
2,533,373 + ECD_02428 0.76 +1.0
2,533,374 - ECD_02428 0.76 -0.3
2,533,746 + -0.0
2,533,801 + +0.1
2,533,812 + +0.5
2,533,902 - ECD_02429 0.10 -0.6
2,533,971 + ECD_02429 0.18 +1.5
2,533,971 + ECD_02429 0.18 +0.5
2,534,029 + ECD_02429 0.24 +1.6
2,534,181 - ECD_02429 0.42 -0.3
2,534,181 - ECD_02429 0.42 +0.5
2,534,325 - ECD_02429 0.58 -1.0
2,534,391 - ECD_02429 0.65 -0.3
2,534,607 - ECD_02429 0.89 +0.5
2,534,694 - +0.1
2,534,694 - +0.2
2,534,809 + +0.1
2,534,809 + -0.2
2,534,816 + -0.2
2,534,837 - -2.2
2,534,864 + +0.1
2,534,906 - +0.3
2,534,906 - +0.1
2,534,927 + +0.2
2,534,928 - -0.1
2,534,967 + -0.5
2,535,020 + ECD_02430 0.13 -0.4
2,535,020 + ECD_02430 0.13 -0.5
2,535,021 - ECD_02430 0.14 -0.0
2,535,021 - ECD_02430 0.14 -0.3
2,535,021 - ECD_02430 0.14 -1.4
2,535,145 + ECD_02430 0.23 -0.5
2,535,145 + ECD_02430 0.23 +1.0
2,535,278 + ECD_02430 0.32 -0.3
2,535,278 + ECD_02430 0.32 -0.6
2,535,278 + ECD_02430 0.32 +0.1
2,535,279 - ECD_02430 0.32 +0.8
2,535,280 + ECD_02430 0.33 +0.4
2,535,280 + ECD_02430 0.33 +0.6
2,535,281 - ECD_02430 0.33 +0.0
2,535,281 - ECD_02430 0.33 -0.5
2,535,281 - ECD_02430 0.33 -0.1
2,535,507 + ECD_02430 0.49 -0.5
2,535,508 - ECD_02430 0.49 -0.2
2,535,508 - ECD_02430 0.49 -0.8
2,535,635 - ECD_02430 0.59 -0.4

Or see this region's nucleotide sequence