Strain Fitness in Escherichia coli BL21 around ECD_02300

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02299 and ECD_02300 are separated by 114 nucleotidesECD_02300 and ECD_02301 are separated by 140 nucleotides ECD_02299: ECD_02299 - putative ion channel protein, at 2,387,516 to 2,388,772 _02299 ECD_02300: ECD_02300 - DUF2502 family putative periplasmic protein, at 2,388,887 to 2,389,213 _02300 ECD_02301: ECD_02301 - manganese/divalent cation transporter, at 2,389,354 to 2,390,592 _02301 Position (kb) 2388 2389 2390Strain fitness (log2 ratio) -1 0 1at 2387.960 kb on - strand, within ECD_02299at 2387.960 kb on - strand, within ECD_02299at 2387.998 kb on + strand, within ECD_02299at 2387.999 kb on - strand, within ECD_02299at 2388.022 kb on - strand, within ECD_02299at 2388.417 kb on - strand, within ECD_02299at 2388.437 kb on - strand, within ECD_02299at 2388.705 kb on + strandat 2388.706 kb on - strandat 2388.708 kb on + strandat 2388.709 kb on - strandat 2388.963 kb on + strand, within ECD_02300at 2389.103 kb on + strand, within ECD_02300at 2389.133 kb on + strand, within ECD_02300at 2389.263 kb on - strandat 2389.355 kb on + strandat 2389.356 kb on - strandat 2389.390 kb on - strandat 2389.564 kb on + strand, within ECD_02301at 2389.767 kb on - strand, within ECD_02301at 2389.925 kb on - strand, within ECD_02301at 2389.925 kb on - strand, within ECD_02301at 2389.953 kb on - strand, within ECD_02301at 2390.091 kb on - strand, within ECD_02301

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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2,387,960 - ECD_02299 0.35 -0.7
2,387,960 - ECD_02299 0.35 +0.1
2,387,998 + ECD_02299 0.38 +1.4
2,387,999 - ECD_02299 0.38 +0.3
2,388,022 - ECD_02299 0.40 +0.0
2,388,417 - ECD_02299 0.72 -0.2
2,388,437 - ECD_02299 0.73 -1.4
2,388,705 + +0.1
2,388,706 - +0.6
2,388,708 + +0.4
2,388,709 - +0.7
2,388,963 + ECD_02300 0.23 -0.0
2,389,103 + ECD_02300 0.66 +0.3
2,389,133 + ECD_02300 0.75 +1.1
2,389,263 - +0.5
2,389,355 + -0.2
2,389,356 - +1.4
2,389,390 - -0.3
2,389,564 + ECD_02301 0.17 +0.6
2,389,767 - ECD_02301 0.33 -0.1
2,389,925 - ECD_02301 0.46 -0.5
2,389,925 - ECD_02301 0.46 +0.3
2,389,953 - ECD_02301 0.48 -1.0
2,390,091 - ECD_02301 0.59 +0.2

Or see this region's nucleotide sequence