Strain Fitness in Escherichia coli BL21 around ECD_00954

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00953 and ECD_00954 are separated by 129 nucleotidesECD_00954 and ECD_00955 are separated by 4 nucleotides ECD_00953: ECD_00953 - replication regulatory ABC-F family DNA-binding ATPase, at 1,015,053 to 1,016,960 _00953 ECD_00954: ECD_00954 - paraquat-inducible, SoxRS-regulated inner membrane protein, at 1,017,090 to 1,018,343 _00954 ECD_00955: ECD_00955 - paraquat-inducible, SoxRS-regulated MCE domain protein, at 1,018,348 to 1,019,988 _00955 Position (kb) 1017 1018 1019Strain fitness (log2 ratio) -1 0 1 2at 1016.208 kb on + strand, within ECD_00953at 1016.273 kb on + strand, within ECD_00953at 1016.509 kb on - strand, within ECD_00953at 1016.649 kb on + strand, within ECD_00953at 1016.737 kb on + strand, within ECD_00953at 1016.737 kb on + strand, within ECD_00953at 1016.737 kb on + strand, within ECD_00953at 1016.744 kb on + strand, within ECD_00953at 1017.068 kb on - strandat 1017.306 kb on - strand, within ECD_00954at 1017.582 kb on + strand, within ECD_00954at 1017.770 kb on + strand, within ECD_00954at 1018.026 kb on - strand, within ECD_00954at 1018.028 kb on + strand, within ECD_00954at 1018.141 kb on + strand, within ECD_00954at 1018.217 kb on + strand, within ECD_00954at 1018.217 kb on + strand, within ECD_00954at 1018.359 kb on + strandat 1018.726 kb on + strand, within ECD_00955at 1018.969 kb on + strand, within ECD_00955

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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1,016,208 + ECD_00953 0.61 -0.3
1,016,273 + ECD_00953 0.64 +1.3
1,016,509 - ECD_00953 0.76 +0.9
1,016,649 + ECD_00953 0.84 -0.7
1,016,737 + ECD_00953 0.88 -0.1
1,016,737 + ECD_00953 0.88 +0.9
1,016,737 + ECD_00953 0.88 -1.4
1,016,744 + ECD_00953 0.89 -0.6
1,017,068 - -1.4
1,017,306 - ECD_00954 0.17 +1.4
1,017,582 + ECD_00954 0.39 +0.5
1,017,770 + ECD_00954 0.54 +0.8
1,018,026 - ECD_00954 0.75 -0.5
1,018,028 + ECD_00954 0.75 +0.9
1,018,141 + ECD_00954 0.84 +2.1
1,018,217 + ECD_00954 0.90 +0.3
1,018,217 + ECD_00954 0.90 -0.5
1,018,359 + +0.0
1,018,726 + ECD_00955 0.23 +0.1
1,018,969 + ECD_00955 0.38 +1.4

Or see this region's nucleotide sequence