Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00859 and ECD_00860 are separated by 94 nucleotides ECD_00860 and ECD_00861 are separated by 9 nucleotides ECD_00861 and ECD_00862 overlap by 4 nucleotides
ECD_00859: ECD_00859 - putrescine ABC transporter periplasmic binding protein, at 898,488 to 899,600
_00859
ECD_00860: ECD_00860 - putrescine ABC transporter ATPase, at 899,695 to 900,828
_00860
ECD_00861: ECD_00861 - putrescine ABC transporter permease, at 900,838 to 901,791
_00861
ECD_00862: ECD_00862 - putrescine ABC transporter permease, at 901,788 to 902,633
_00862
Position (kb) 899
900
901 Strain fitness (log2 ratio) -1
0
1
2 at 898.885 kb on - strand, within ECD_00859 at 899.173 kb on - strand, within ECD_00859 at 899.323 kb on + strand, within ECD_00859 at 899.379 kb on + strand, within ECD_00859 at 899.380 kb on - strand, within ECD_00859 at 899.821 kb on + strand, within ECD_00860 at 899.821 kb on + strand, within ECD_00860 at 899.821 kb on + strand, within ECD_00860 at 899.821 kb on + strand, within ECD_00860 at 899.821 kb on + strand, within ECD_00860 at 899.821 kb on + strand, within ECD_00860 at 899.822 kb on - strand, within ECD_00860 at 899.822 kb on - strand, within ECD_00860 at 899.884 kb on - strand, within ECD_00860 at 899.992 kb on + strand, within ECD_00860 at 900.057 kb on - strand, within ECD_00860 at 900.203 kb on + strand, within ECD_00860 at 900.204 kb on - strand, within ECD_00860 at 900.407 kb on - strand, within ECD_00860 at 900.420 kb on + strand, within ECD_00860 at 900.633 kb on + strand, within ECD_00860 at 900.656 kb on + strand, within ECD_00860 at 900.732 kb on - strand at 901.036 kb on - strand, within ECD_00861 at 901.132 kb on + strand, within ECD_00861 at 901.133 kb on - strand, within ECD_00861 at 901.178 kb on + strand, within ECD_00861 at 901.218 kb on + strand, within ECD_00861 at 901.219 kb on - strand, within ECD_00861 at 901.401 kb on + strand, within ECD_00861 at 901.420 kb on + strand, within ECD_00861 at 901.560 kb on + strand, within ECD_00861
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 898,885 - ECD_00859 0.36 -0.3 899,173 - ECD_00859 0.62 +0.9 899,323 + ECD_00859 0.75 +0.1 899,379 + ECD_00859 0.80 +0.4 899,380 - ECD_00859 0.80 -0.5 899,821 + ECD_00860 0.11 +0.7 899,821 + ECD_00860 0.11 +0.2 899,821 + ECD_00860 0.11 -0.2 899,821 + ECD_00860 0.11 +1.4 899,821 + ECD_00860 0.11 +1.8 899,821 + ECD_00860 0.11 +0.2 899,822 - ECD_00860 0.11 +1.1 899,822 - ECD_00860 0.11 +1.3 899,884 - ECD_00860 0.17 -0.7 899,992 + ECD_00860 0.26 -0.4 900,057 - ECD_00860 0.32 +1.3 900,203 + ECD_00860 0.45 -0.8 900,204 - ECD_00860 0.45 -0.2 900,407 - ECD_00860 0.63 -0.5 900,420 + ECD_00860 0.64 +0.2 900,633 + ECD_00860 0.83 +2.2 900,656 + ECD_00860 0.85 +0.2 900,732 - +0.1 901,036 - ECD_00861 0.21 +0.2 901,132 + ECD_00861 0.31 +0.5 901,133 - ECD_00861 0.31 +1.3 901,178 + ECD_00861 0.36 -0.4 901,218 + ECD_00861 0.40 +1.0 901,219 - ECD_00861 0.40 -0.7 901,401 + ECD_00861 0.59 +1.4 901,420 + ECD_00861 0.61 +1.4 901,560 + ECD_00861 0.76 +1.3
Or see this region's nucleotide sequence