Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00498 and ECD_00499 overlap by 8 nucleotides ECD_00499 and ECD_00500 overlap by 4 nucleotides ECD_00500 and ECD_00501 overlap by 4 nucleotides ECD_00501 and ECD_00502 are separated by 85 nucleotides ECD_00502 and ECD_00504 are separated by 717 nucleotides
ECD_00498: ECD_00498 - DLP12 prophage; conserved protein, at 541,516 to 541,686
_00498
ECD_00499: ECD_00499 - DLP12 prophage; uncharacterized protein, at 541,679 to 541,969
_00499
ECD_00500: ECD_00500 - DLP12 prophage; endonuclease RUS, at 541,966 to 542,328
_00500
ECD_00501: ECD_00501 - uncharacterized protein, DLP12 prophage, at 542,325 to 542,465
_00501
ECD_00502: ECD_00502 - DLP12 prophage; putative antitermination protein, at 542,551 to 542,934
_00502
ECD_00504: ECD_00504 - IS1 protein InsB, at 543,652 to 544,155
_00504
Position (kb) 542
543 Strain fitness (log2 ratio) -2
-1
0
1 at 541.555 kb on + strand, within ECD_00498 at 541.556 kb on - strand, within ECD_00498 at 541.556 kb on - strand, within ECD_00498 at 541.562 kb on + strand, within ECD_00498 at 541.563 kb on - strand, within ECD_00498 at 541.575 kb on + strand, within ECD_00498 at 541.575 kb on + strand, within ECD_00498 at 541.582 kb on - strand, within ECD_00498 at 541.627 kb on - strand, within ECD_00498 at 541.742 kb on - strand, within ECD_00499 at 541.918 kb on + strand, within ECD_00499 at 541.956 kb on + strand at 541.980 kb on + strand at 542.014 kb on + strand, within ECD_00500 at 542.015 kb on - strand, within ECD_00500 at 542.122 kb on - strand, within ECD_00500 at 542.343 kb on - strand, within ECD_00501 at 542.383 kb on + strand, within ECD_00501 at 542.384 kb on - strand, within ECD_00501 at 542.384 kb on - strand, within ECD_00501 at 542.486 kb on + strand at 542.545 kb on - strand at 542.774 kb on - strand, within ECD_00502 at 543.126 kb on - strand at 543.206 kb on - strand at 543.258 kb on + strand at 543.275 kb on + strand at 543.283 kb on + strand at 543.449 kb on + strand at 543.469 kb on - strand at 543.503 kb on - strand at 543.546 kb on - strand at 543.608 kb on + strand at 543.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 541,555 + ECD_00498 0.23 -0.4 541,556 - ECD_00498 0.23 -1.1 541,556 - ECD_00498 0.23 +0.5 541,562 + ECD_00498 0.27 -0.3 541,563 - ECD_00498 0.27 -0.1 541,575 + ECD_00498 0.35 +0.0 541,575 + ECD_00498 0.35 -2.1 541,582 - ECD_00498 0.39 -0.3 541,627 - ECD_00498 0.65 +0.9 541,742 - ECD_00499 0.22 +0.3 541,918 + ECD_00499 0.82 +0.6 541,956 + +1.5 541,980 + +0.1 542,014 + ECD_00500 0.13 -0.1 542,015 - ECD_00500 0.13 +1.0 542,122 - ECD_00500 0.43 -0.6 542,343 - ECD_00501 0.13 -0.1 542,383 + ECD_00501 0.41 +1.0 542,384 - ECD_00501 0.42 -1.1 542,384 - ECD_00501 0.42 +0.2 542,486 + +0.0 542,545 - +0.2 542,774 - ECD_00502 0.58 +0.7 543,126 - +0.9 543,206 - -0.4 543,258 + +0.7 543,275 + -0.0 543,283 + -0.7 543,449 + +1.4 543,469 - -0.7 543,503 - -0.7 543,546 - +0.4 543,608 + -0.8 543,615 - +1.2
Or see this region's nucleotide sequence