Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00106 and ECD_00107 are separated by 9 nucleotides ECD_00107 and ECD_00108 are separated by 202 nucleotides
ECD_00106: ECD_00106 - T2SE secretion family protein; P-loop ATPase superfamily protein, at 118,519 to 119,904
_00106
ECD_00107: ECD_00107 - putative prepilin peptidase-dependent pilin, at 119,914 to 120,354
_00107
ECD_00108: ECD_00108 - quinolinate phosphoribosyltransferase, at 120,557 to 121,450
_00108
Position (kb) 119
120
121 Strain fitness (log2 ratio) -2
-1
0
1 at 118.928 kb on - strand, within ECD_00106 at 118.957 kb on + strand, within ECD_00106 at 118.958 kb on - strand, within ECD_00106 at 118.958 kb on - strand, within ECD_00106 at 118.958 kb on - strand, within ECD_00106 at 119.163 kb on + strand, within ECD_00106 at 119.169 kb on + strand, within ECD_00106 at 119.170 kb on - strand, within ECD_00106 at 119.359 kb on + strand, within ECD_00106 at 119.359 kb on + strand, within ECD_00106 at 119.360 kb on - strand, within ECD_00106 at 119.362 kb on + strand, within ECD_00106 at 119.363 kb on - strand, within ECD_00106 at 119.389 kb on + strand, within ECD_00106 at 119.552 kb on - strand, within ECD_00106 at 119.552 kb on - strand, within ECD_00106 at 119.638 kb on + strand, within ECD_00106 at 119.639 kb on - strand, within ECD_00106 at 119.639 kb on - strand, within ECD_00106 at 119.651 kb on - strand, within ECD_00106 at 119.761 kb on - strand, within ECD_00106 at 119.794 kb on + strand at 119.795 kb on - strand at 119.898 kb on + strand at 119.899 kb on - strand at 119.915 kb on + strand at 119.915 kb on + strand at 119.916 kb on - strand at 119.979 kb on + strand, within ECD_00107 at 120.163 kb on - strand, within ECD_00107 at 120.163 kb on - strand, within ECD_00107 at 120.166 kb on + strand, within ECD_00107 at 120.167 kb on - strand, within ECD_00107 at 120.167 kb on - strand, within ECD_00107 at 120.167 kb on - strand, within ECD_00107 at 120.167 kb on - strand, within ECD_00107 at 120.196 kb on + strand, within ECD_00107 at 120.226 kb on + strand, within ECD_00107 at 120.227 kb on - strand, within ECD_00107 at 120.227 kb on - strand, within ECD_00107 at 120.258 kb on - strand, within ECD_00107 at 120.258 kb on - strand, within ECD_00107 at 120.327 kb on + strand at 120.555 kb on + strand at 120.556 kb on - strand at 120.599 kb on - strand at 120.619 kb on + strand at 120.804 kb on - strand, within ECD_00108 at 120.880 kb on + strand, within ECD_00108 at 120.881 kb on - strand, within ECD_00108 at 120.884 kb on - strand, within ECD_00108 at 121.038 kb on + strand, within ECD_00108 at 121.038 kb on + strand, within ECD_00108 at 121.216 kb on + strand, within ECD_00108 at 121.217 kb on - strand, within ECD_00108 at 121.346 kb on + strand, within ECD_00108
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 118,928 - ECD_00106 0.30 +0.4 118,957 + ECD_00106 0.32 -0.3 118,958 - ECD_00106 0.32 +0.3 118,958 - ECD_00106 0.32 -0.2 118,958 - ECD_00106 0.32 +1.3 119,163 + ECD_00106 0.46 -0.0 119,169 + ECD_00106 0.47 -0.7 119,170 - ECD_00106 0.47 -0.6 119,359 + ECD_00106 0.61 +0.5 119,359 + ECD_00106 0.61 -0.1 119,360 - ECD_00106 0.61 -0.2 119,362 + ECD_00106 0.61 -2.1 119,363 - ECD_00106 0.61 +0.3 119,389 + ECD_00106 0.63 +0.1 119,552 - ECD_00106 0.75 +0.7 119,552 - ECD_00106 0.75 +0.4 119,638 + ECD_00106 0.81 +0.4 119,639 - ECD_00106 0.81 -0.0 119,639 - ECD_00106 0.81 +0.5 119,651 - ECD_00106 0.82 -0.5 119,761 - ECD_00106 0.90 -0.2 119,794 + +0.2 119,795 - +0.1 119,898 + +0.5 119,899 - +0.6 119,915 + -0.3 119,915 + +1.6 119,916 - +0.2 119,979 + ECD_00107 0.15 -0.1 120,163 - ECD_00107 0.56 +0.4 120,163 - ECD_00107 0.56 -0.3 120,166 + ECD_00107 0.57 +0.5 120,167 - ECD_00107 0.57 -0.5 120,167 - ECD_00107 0.57 +1.0 120,167 - ECD_00107 0.57 +0.3 120,167 - ECD_00107 0.57 +0.0 120,196 + ECD_00107 0.64 -0.3 120,226 + ECD_00107 0.71 +1.3 120,227 - ECD_00107 0.71 -0.3 120,227 - ECD_00107 0.71 +0.6 120,258 - ECD_00107 0.78 +0.9 120,258 - ECD_00107 0.78 +0.6 120,327 + +0.3 120,555 + -0.4 120,556 - +0.0 120,599 - +0.1 120,619 + +0.5 120,804 - ECD_00108 0.28 +0.4 120,880 + ECD_00108 0.36 -0.3 120,881 - ECD_00108 0.36 -0.1 120,884 - ECD_00108 0.37 +0.0 121,038 + ECD_00108 0.54 -1.0 121,038 + ECD_00108 0.54 +0.7 121,216 + ECD_00108 0.74 +0.1 121,217 - ECD_00108 0.74 -0.1 121,346 + ECD_00108 0.88 +0.4
Or see this region's nucleotide sequence