Strain Fitness in Escherichia coli BL21 around ECD_04339

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02361 and ECD_04339 are separated by 98 nucleotidesECD_04339 and ECD_02362 are separated by 380 nucleotidesECD_02362 and ECD_02363 are separated by 3 nucleotides ECD_02361: ECD_02361 - aminoglycoside/multidrug efflux system, at 2,452,084 to 2,455,197 _02361 ECD_04339: ECD_04339 - stress-induced small enterobacterial protein, at 2,455,296 to 2,455,355 _04339 ECD_02362: ECD_02362 - putative ArsC family reductase, at 2,455,736 to 2,456,092 _02362 ECD_02363: ECD_02363 - N-succinyl-diaminopimelate deacylase, at 2,456,096 to 2,457,223 _02363 Position (kb) 2455 2456Strain fitness (log2 ratio) -1 0 1at 2454.313 kb on - strand, within ECD_02361at 2454.349 kb on + strand, within ECD_02361at 2454.363 kb on + strand, within ECD_02361at 2454.392 kb on - strand, within ECD_02361at 2454.445 kb on + strand, within ECD_02361at 2454.445 kb on + strand, within ECD_02361at 2454.446 kb on - strand, within ECD_02361at 2454.446 kb on - strand, within ECD_02361at 2454.446 kb on - strand, within ECD_02361at 2454.446 kb on - strand, within ECD_02361at 2454.456 kb on + strand, within ECD_02361at 2454.456 kb on + strand, within ECD_02361at 2454.456 kb on + strand, within ECD_02361at 2454.457 kb on - strand, within ECD_02361at 2454.532 kb on + strand, within ECD_02361at 2454.533 kb on - strand, within ECD_02361at 2454.533 kb on - strand, within ECD_02361at 2454.751 kb on + strand, within ECD_02361at 2454.853 kb on + strand, within ECD_02361at 2455.120 kb on - strandat 2455.302 kb on - strand, within ECD_04339at 2455.311 kb on - strand, within ECD_04339at 2455.371 kb on - strandat 2455.375 kb on - strandat 2455.437 kb on + strandat 2455.462 kb on - strandat 2455.466 kb on - strandat 2455.466 kb on - strandat 2455.468 kb on + strandat 2455.652 kb on + strandat 2455.695 kb on + strandat 2455.707 kb on + strandat 2455.715 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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2,454,313 - ECD_02361 0.72 +0.9
2,454,349 + ECD_02361 0.73 -0.6
2,454,363 + ECD_02361 0.73 -0.1
2,454,392 - ECD_02361 0.74 +0.1
2,454,445 + ECD_02361 0.76 -1.2
2,454,445 + ECD_02361 0.76 -1.2
2,454,446 - ECD_02361 0.76 +0.5
2,454,446 - ECD_02361 0.76 +0.1
2,454,446 - ECD_02361 0.76 -0.4
2,454,446 - ECD_02361 0.76 -0.1
2,454,456 + ECD_02361 0.76 -0.0
2,454,456 + ECD_02361 0.76 -0.3
2,454,456 + ECD_02361 0.76 +1.1
2,454,457 - ECD_02361 0.76 +0.6
2,454,532 + ECD_02361 0.79 +0.3
2,454,533 - ECD_02361 0.79 -0.7
2,454,533 - ECD_02361 0.79 -0.4
2,454,751 + ECD_02361 0.86 -0.5
2,454,853 + ECD_02361 0.89 -0.1
2,455,120 - -0.0
2,455,302 - ECD_04339 0.10 +0.6
2,455,311 - ECD_04339 0.25 +0.6
2,455,371 - -0.5
2,455,375 - -0.0
2,455,437 + +0.1
2,455,462 - -0.4
2,455,466 - -0.1
2,455,466 - +0.0
2,455,468 + +0.3
2,455,652 + -0.1
2,455,695 + -0.1
2,455,707 + +0.0
2,455,715 + -0.6

Or see this region's nucleotide sequence