Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02361 and ECD_04339 are separated by 98 nucleotides ECD_04339 and ECD_02362 are separated by 380 nucleotides ECD_02362 and ECD_02363 are separated by 3 nucleotides
ECD_02361: ECD_02361 - aminoglycoside/multidrug efflux system, at 2,452,084 to 2,455,197
_02361
ECD_04339: ECD_04339 - stress-induced small enterobacterial protein, at 2,455,296 to 2,455,355
_04339
ECD_02362: ECD_02362 - putative ArsC family reductase, at 2,455,736 to 2,456,092
_02362
ECD_02363: ECD_02363 - N-succinyl-diaminopimelate deacylase, at 2,456,096 to 2,457,223
_02363
Position (kb)
2455
2456 Strain fitness (log2 ratio)
-1
0
1 at 2454.313 kb on - strand, within ECD_02361 at 2454.349 kb on + strand, within ECD_02361 at 2454.363 kb on + strand, within ECD_02361 at 2454.392 kb on - strand, within ECD_02361 at 2454.445 kb on + strand, within ECD_02361 at 2454.445 kb on + strand, within ECD_02361 at 2454.446 kb on - strand, within ECD_02361 at 2454.446 kb on - strand, within ECD_02361 at 2454.446 kb on - strand, within ECD_02361 at 2454.446 kb on - strand, within ECD_02361 at 2454.456 kb on + strand, within ECD_02361 at 2454.456 kb on + strand, within ECD_02361 at 2454.456 kb on + strand, within ECD_02361 at 2454.457 kb on - strand, within ECD_02361 at 2454.532 kb on + strand, within ECD_02361 at 2454.533 kb on - strand, within ECD_02361 at 2454.533 kb on - strand, within ECD_02361 at 2454.751 kb on + strand, within ECD_02361 at 2454.853 kb on + strand, within ECD_02361 at 2455.120 kb on - strand at 2455.302 kb on - strand, within ECD_04339 at 2455.311 kb on - strand, within ECD_04339 at 2455.371 kb on - strand at 2455.375 kb on - strand at 2455.437 kb on + strand at 2455.462 kb on - strand at 2455.466 kb on - strand at 2455.466 kb on - strand at 2455.468 kb on + strand at 2455.652 kb on + strand at 2455.695 kb on + strand at 2455.707 kb on + strand at 2455.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 2,454,313 - ECD_02361 0.72 +0.9 2,454,349 + ECD_02361 0.73 -0.6 2,454,363 + ECD_02361 0.73 -0.1 2,454,392 - ECD_02361 0.74 +0.1 2,454,445 + ECD_02361 0.76 -1.2 2,454,445 + ECD_02361 0.76 -1.2 2,454,446 - ECD_02361 0.76 +0.5 2,454,446 - ECD_02361 0.76 +0.1 2,454,446 - ECD_02361 0.76 -0.4 2,454,446 - ECD_02361 0.76 -0.1 2,454,456 + ECD_02361 0.76 -0.0 2,454,456 + ECD_02361 0.76 -0.3 2,454,456 + ECD_02361 0.76 +1.1 2,454,457 - ECD_02361 0.76 +0.6 2,454,532 + ECD_02361 0.79 +0.3 2,454,533 - ECD_02361 0.79 -0.7 2,454,533 - ECD_02361 0.79 -0.4 2,454,751 + ECD_02361 0.86 -0.5 2,454,853 + ECD_02361 0.89 -0.1 2,455,120 - -0.0 2,455,302 - ECD_04339 0.10 +0.6 2,455,311 - ECD_04339 0.25 +0.6 2,455,371 - -0.5 2,455,375 - -0.0 2,455,437 + +0.1 2,455,462 - -0.4 2,455,466 - -0.1 2,455,466 - +0.0 2,455,468 + +0.3 2,455,652 + -0.1 2,455,695 + -0.1 2,455,707 + +0.0 2,455,715 + -0.6
Or see this region's nucleotide sequence