Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03305 and ECD_03306 overlap by 4 nucleotides ECD_03306 and ECD_03307 are separated by 47 nucleotides ECD_03307 and ECD_03308 are separated by 423 nucleotides
ECD_03305: ECD_03305 - branched-chain amino acid ABC transporter permease, at 3,456,573 to 3,457,850
_03305
ECD_03306: ECD_03306 - branched-chain amino acid ABC transporter permease, at 3,457,847 to 3,458,773
_03306
ECD_03307: ECD_03307 - leucine transporter subunit, at 3,458,821 to 3,459,930
_03307
ECD_03308: ECD_03308 - PanD autocleavage accelerator, panothenate synthesis, at 3,460,354 to 3,460,737
_03308
Position (kb)
3458
3459
3460 Strain fitness (log2 ratio)
-2
-1
0
1 at 3457.835 kb on + strand at 3457.841 kb on + strand at 3457.841 kb on + strand at 3457.841 kb on + strand at 3457.842 kb on - strand at 3457.842 kb on - strand at 3457.842 kb on - strand at 3457.842 kb on - strand at 3457.842 kb on - strand at 3457.842 kb on - strand at 3457.851 kb on - strand at 3457.936 kb on + strand at 3457.936 kb on + strand at 3457.937 kb on - strand at 3457.938 kb on + strand at 3458.076 kb on + strand, within ECD_03306 at 3458.076 kb on + strand, within ECD_03306 at 3458.077 kb on - strand, within ECD_03306 at 3458.176 kb on + strand, within ECD_03306 at 3458.176 kb on + strand, within ECD_03306 at 3458.176 kb on + strand, within ECD_03306 at 3458.176 kb on + strand, within ECD_03306 at 3458.284 kb on + strand, within ECD_03306 at 3458.314 kb on + strand, within ECD_03306 at 3458.314 kb on + strand, within ECD_03306 at 3458.381 kb on + strand, within ECD_03306 at 3458.381 kb on + strand, within ECD_03306 at 3458.382 kb on - strand, within ECD_03306 at 3458.413 kb on - strand, within ECD_03306 at 3458.532 kb on - strand, within ECD_03306 at 3458.619 kb on + strand, within ECD_03306 at 3458.619 kb on + strand, within ECD_03306 at 3458.619 kb on + strand, within ECD_03306 at 3458.619 kb on + strand, within ECD_03306 at 3458.619 kb on + strand, within ECD_03306 at 3458.619 kb on + strand, within ECD_03306 at 3458.620 kb on - strand, within ECD_03306 at 3458.620 kb on - strand, within ECD_03306 at 3458.620 kb on - strand, within ECD_03306 at 3458.620 kb on - strand, within ECD_03306 at 3458.632 kb on + strand, within ECD_03306 at 3458.632 kb on + strand, within ECD_03306 at 3458.632 kb on + strand, within ECD_03306 at 3458.632 kb on + strand, within ECD_03306 at 3458.632 kb on + strand, within ECD_03306 at 3458.633 kb on - strand, within ECD_03306 at 3458.633 kb on - strand, within ECD_03306 at 3458.634 kb on + strand, within ECD_03306 at 3458.634 kb on + strand, within ECD_03306 at 3458.634 kb on + strand, within ECD_03306 at 3458.634 kb on + strand, within ECD_03306 at 3458.634 kb on + strand, within ECD_03306 at 3458.635 kb on - strand, within ECD_03306 at 3458.635 kb on - strand, within ECD_03306 at 3458.635 kb on - strand, within ECD_03306 at 3458.688 kb on + strand at 3458.689 kb on - strand at 3458.709 kb on + strand at 3458.754 kb on + strand at 3458.756 kb on + strand at 3458.773 kb on + strand at 3458.773 kb on + strand at 3458.774 kb on - strand at 3459.020 kb on + strand, within ECD_03307 at 3459.020 kb on + strand, within ECD_03307 at 3459.021 kb on - strand, within ECD_03307 at 3459.035 kb on + strand, within ECD_03307 at 3459.036 kb on - strand, within ECD_03307 at 3459.107 kb on + strand, within ECD_03307 at 3459.121 kb on - strand, within ECD_03307 at 3459.195 kb on + strand, within ECD_03307 at 3459.196 kb on - strand, within ECD_03307 at 3459.340 kb on - strand, within ECD_03307 at 3459.413 kb on + strand, within ECD_03307 at 3459.414 kb on - strand, within ECD_03307 at 3459.471 kb on - strand, within ECD_03307 at 3459.471 kb on - strand, within ECD_03307 at 3459.513 kb on + strand, within ECD_03307 at 3459.519 kb on + strand, within ECD_03307 at 3459.520 kb on - strand, within ECD_03307 at 3459.582 kb on + strand, within ECD_03307 at 3459.583 kb on - strand, within ECD_03307 at 3459.596 kb on + strand, within ECD_03307 at 3459.596 kb on + strand, within ECD_03307 at 3459.596 kb on + strand, within ECD_03307 at 3459.597 kb on - strand, within ECD_03307 at 3459.600 kb on + strand, within ECD_03307 at 3459.619 kb on - strand, within ECD_03307 at 3459.647 kb on + strand, within ECD_03307 at 3459.647 kb on + strand, within ECD_03307 at 3459.651 kb on + strand, within ECD_03307 at 3459.651 kb on + strand, within ECD_03307 at 3459.651 kb on + strand, within ECD_03307 at 3459.652 kb on - strand, within ECD_03307 at 3459.652 kb on - strand, within ECD_03307 at 3459.717 kb on - strand, within ECD_03307 at 3459.745 kb on - strand, within ECD_03307 at 3459.745 kb on - strand, within ECD_03307 at 3459.910 kb on - strand at 3459.930 kb on + strand at 3459.980 kb on - strand at 3460.245 kb on - strand at 3460.340 kb on + strand at 3460.430 kb on - strand, within ECD_03308 at 3460.467 kb on + strand, within ECD_03308 at 3460.591 kb on + strand, within ECD_03308 at 3460.704 kb on + strand at 3460.862 kb on + strand at 3460.888 kb on + strand at 3460.888 kb on + strand at 3460.898 kb on + strand at 3460.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 3,457,835 + -0.0 3,457,841 + +0.4 3,457,841 + -0.1 3,457,841 + -0.0 3,457,842 - -2.6 3,457,842 - +0.2 3,457,842 - -0.8 3,457,842 - +0.3 3,457,842 - +0.9 3,457,842 - +1.7 3,457,851 - +0.7 3,457,936 + +0.3 3,457,936 + -0.6 3,457,937 - -0.1 3,457,938 + -0.7 3,458,076 + ECD_03306 0.25 +0.3 3,458,076 + ECD_03306 0.25 +0.0 3,458,077 - ECD_03306 0.25 +0.2 3,458,176 + ECD_03306 0.35 -0.5 3,458,176 + ECD_03306 0.35 +0.6 3,458,176 + ECD_03306 0.35 +0.5 3,458,176 + ECD_03306 0.35 -1.0 3,458,284 + ECD_03306 0.47 -0.5 3,458,314 + ECD_03306 0.50 +1.4 3,458,314 + ECD_03306 0.50 +0.1 3,458,381 + ECD_03306 0.58 +0.3 3,458,381 + ECD_03306 0.58 +1.0 3,458,382 - ECD_03306 0.58 +0.1 3,458,413 - ECD_03306 0.61 -0.3 3,458,532 - ECD_03306 0.74 -0.0 3,458,619 + ECD_03306 0.83 +0.3 3,458,619 + ECD_03306 0.83 -0.5 3,458,619 + ECD_03306 0.83 +0.3 3,458,619 + ECD_03306 0.83 -1.2 3,458,619 + ECD_03306 0.83 +0.7 3,458,619 + ECD_03306 0.83 -0.2 3,458,620 - ECD_03306 0.83 -0.8 3,458,620 - ECD_03306 0.83 -0.1 3,458,620 - ECD_03306 0.83 +0.4 3,458,620 - ECD_03306 0.83 +0.2 3,458,632 + ECD_03306 0.85 +1.0 3,458,632 + ECD_03306 0.85 -0.3 3,458,632 + ECD_03306 0.85 +0.4 3,458,632 + ECD_03306 0.85 +0.7 3,458,632 + ECD_03306 0.85 -0.2 3,458,633 - ECD_03306 0.85 +1.2 3,458,633 - ECD_03306 0.85 +0.4 3,458,634 + ECD_03306 0.85 +0.2 3,458,634 + ECD_03306 0.85 -0.3 3,458,634 + ECD_03306 0.85 +0.4 3,458,634 + ECD_03306 0.85 -0.7 3,458,634 + ECD_03306 0.85 +0.4 3,458,635 - ECD_03306 0.85 -0.0 3,458,635 - ECD_03306 0.85 -0.7 3,458,635 - ECD_03306 0.85 +0.6 3,458,688 + +0.3 3,458,689 - -0.6 3,458,709 + +0.3 3,458,754 + +0.0 3,458,756 + -0.9 3,458,773 + -0.3 3,458,773 + -0.0 3,458,774 - +0.1 3,459,020 + ECD_03307 0.18 +0.5 3,459,020 + ECD_03307 0.18 -1.7 3,459,021 - ECD_03307 0.18 +1.2 3,459,035 + ECD_03307 0.19 -0.3 3,459,036 - ECD_03307 0.19 -0.0 3,459,107 + ECD_03307 0.26 +0.1 3,459,121 - ECD_03307 0.27 -0.1 3,459,195 + ECD_03307 0.34 +0.2 3,459,196 - ECD_03307 0.34 +0.4 3,459,340 - ECD_03307 0.47 +0.5 3,459,413 + ECD_03307 0.53 +0.7 3,459,414 - ECD_03307 0.53 +0.7 3,459,471 - ECD_03307 0.59 -0.3 3,459,471 - ECD_03307 0.59 +0.4 3,459,513 + ECD_03307 0.62 -0.4 3,459,519 + ECD_03307 0.63 +1.3 3,459,520 - ECD_03307 0.63 +1.4 3,459,582 + ECD_03307 0.69 +0.1 3,459,583 - ECD_03307 0.69 -0.1 3,459,596 + ECD_03307 0.70 +1.1 3,459,596 + ECD_03307 0.70 -0.8 3,459,596 + ECD_03307 0.70 +1.0 3,459,597 - ECD_03307 0.70 +0.2 3,459,600 + ECD_03307 0.70 -0.7 3,459,619 - ECD_03307 0.72 -0.2 3,459,647 + ECD_03307 0.74 +0.4 3,459,647 + ECD_03307 0.74 -0.1 3,459,651 + ECD_03307 0.75 +0.7 3,459,651 + ECD_03307 0.75 -0.1 3,459,651 + ECD_03307 0.75 +0.5 3,459,652 - ECD_03307 0.75 -0.1 3,459,652 - ECD_03307 0.75 +0.6 3,459,717 - ECD_03307 0.81 -0.4 3,459,745 - ECD_03307 0.83 +0.3 3,459,745 - ECD_03307 0.83 +0.3 3,459,910 - +0.0 3,459,930 + +0.0 3,459,980 - +0.6 3,460,245 - +0.3 3,460,340 + -0.2 3,460,430 - ECD_03308 0.20 -1.9 3,460,467 + ECD_03308 0.29 +0.9 3,460,591 + ECD_03308 0.62 -0.7 3,460,704 + +0.2 3,460,862 + -0.0 3,460,888 + -0.2 3,460,888 + -1.1 3,460,898 + +0.6 3,460,930 + -0.8
Or see this region's nucleotide sequence