Strain Fitness in Escherichia coli BL21 around ECD_02959

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02958 and ECD_02959 are separated by 4 nucleotidesECD_02959 and ECD_02960 are separated by 82 nucleotides ECD_02958: ECD_02958 - sodium:serine/threonine symporter, at 3,106,243 to 3,107,487 _02958 ECD_02959: ECD_02959 - Imp-YgjV family inner membrane protein, at 3,107,492 to 3,108,043 _02959 ECD_02960: ECD_02960 - altronate hydrolase, at 3,108,126 to 3,109,613 _02960 Position (kb) 3107 3108 3109Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3106.504 kb on + strand, within ECD_02958at 3106.541 kb on + strand, within ECD_02958at 3106.541 kb on + strand, within ECD_02958at 3106.597 kb on - strand, within ECD_02958at 3106.687 kb on + strand, within ECD_02958at 3106.687 kb on + strand, within ECD_02958at 3106.687 kb on + strand, within ECD_02958at 3106.687 kb on + strand, within ECD_02958at 3106.687 kb on + strand, within ECD_02958at 3106.688 kb on - strand, within ECD_02958at 3106.771 kb on - strand, within ECD_02958at 3106.771 kb on - strand, within ECD_02958at 3106.771 kb on - strand, within ECD_02958at 3106.771 kb on - strand, within ECD_02958at 3106.791 kb on + strand, within ECD_02958at 3106.917 kb on + strand, within ECD_02958at 3106.917 kb on + strand, within ECD_02958at 3106.917 kb on + strand, within ECD_02958at 3106.918 kb on - strand, within ECD_02958at 3106.918 kb on - strand, within ECD_02958at 3106.918 kb on - strand, within ECD_02958at 3106.922 kb on + strand, within ECD_02958at 3107.020 kb on + strand, within ECD_02958at 3107.020 kb on + strand, within ECD_02958at 3107.021 kb on - strand, within ECD_02958at 3107.021 kb on - strand, within ECD_02958at 3107.065 kb on - strand, within ECD_02958at 3107.100 kb on + strand, within ECD_02958at 3107.100 kb on + strand, within ECD_02958at 3107.100 kb on + strand, within ECD_02958at 3107.100 kb on + strand, within ECD_02958at 3107.105 kb on - strand, within ECD_02958at 3107.115 kb on + strand, within ECD_02958at 3107.116 kb on - strand, within ECD_02958at 3107.164 kb on - strand, within ECD_02958at 3107.190 kb on + strand, within ECD_02958at 3107.190 kb on + strand, within ECD_02958at 3107.190 kb on + strand, within ECD_02958at 3107.310 kb on + strand, within ECD_02958at 3107.313 kb on + strand, within ECD_02958at 3107.313 kb on + strand, within ECD_02958at 3107.314 kb on - strand, within ECD_02958at 3107.314 kb on - strand, within ECD_02958at 3107.314 kb on - strand, within ECD_02958at 3107.314 kb on - strand, within ECD_02958at 3107.314 kb on - strand, within ECD_02958at 3107.323 kb on - strand, within ECD_02958at 3107.482 kb on - strandat 3107.482 kb on - strandat 3107.725 kb on + strand, within ECD_02959at 3107.753 kb on + strand, within ECD_02959at 3107.754 kb on - strand, within ECD_02959at 3107.754 kb on - strand, within ECD_02959at 3107.754 kb on - strand, within ECD_02959at 3107.826 kb on - strand, within ECD_02959at 3107.840 kb on + strand, within ECD_02959at 3107.840 kb on + strand, within ECD_02959at 3107.841 kb on - strand, within ECD_02959at 3107.845 kb on + strand, within ECD_02959at 3107.845 kb on + strand, within ECD_02959at 3107.846 kb on - strand, within ECD_02959at 3107.846 kb on - strand, within ECD_02959at 3107.854 kb on + strand, within ECD_02959at 3107.854 kb on + strand, within ECD_02959at 3107.855 kb on - strand, within ECD_02959at 3107.855 kb on - strand, within ECD_02959at 3107.933 kb on - strand, within ECD_02959at 3107.934 kb on + strand, within ECD_02959at 3108.047 kb on - strandat 3108.055 kb on - strandat 3108.127 kb on + strandat 3108.129 kb on + strandat 3108.135 kb on + strandat 3108.390 kb on - strand, within ECD_02960at 3108.390 kb on - strand, within ECD_02960at 3108.447 kb on + strand, within ECD_02960at 3108.447 kb on + strand, within ECD_02960at 3108.448 kb on - strand, within ECD_02960at 3108.448 kb on - strand, within ECD_02960at 3108.527 kb on + strand, within ECD_02960at 3108.595 kb on + strand, within ECD_02960at 3108.596 kb on - strand, within ECD_02960at 3108.618 kb on - strand, within ECD_02960at 3108.622 kb on + strand, within ECD_02960at 3108.622 kb on + strand, within ECD_02960at 3108.623 kb on - strand, within ECD_02960at 3108.795 kb on - strand, within ECD_02960at 3108.889 kb on + strand, within ECD_02960at 3108.889 kb on + strand, within ECD_02960at 3108.889 kb on + strand, within ECD_02960at 3108.889 kb on + strand, within ECD_02960at 3108.890 kb on - strand, within ECD_02960at 3108.890 kb on - strand, within ECD_02960

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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3,106,504 + ECD_02958 0.21 +0.3
3,106,541 + ECD_02958 0.24 -0.4
3,106,541 + ECD_02958 0.24 +1.1
3,106,597 - ECD_02958 0.28 -0.0
3,106,687 + ECD_02958 0.36 +0.7
3,106,687 + ECD_02958 0.36 -1.3
3,106,687 + ECD_02958 0.36 +0.4
3,106,687 + ECD_02958 0.36 +0.1
3,106,687 + ECD_02958 0.36 -1.2
3,106,688 - ECD_02958 0.36 +0.0
3,106,771 - ECD_02958 0.42 -0.3
3,106,771 - ECD_02958 0.42 +0.0
3,106,771 - ECD_02958 0.42 -0.5
3,106,771 - ECD_02958 0.42 +0.1
3,106,791 + ECD_02958 0.44 +0.1
3,106,917 + ECD_02958 0.54 -0.2
3,106,917 + ECD_02958 0.54 -0.2
3,106,917 + ECD_02958 0.54 -0.1
3,106,918 - ECD_02958 0.54 +3.4
3,106,918 - ECD_02958 0.54 -0.6
3,106,918 - ECD_02958 0.54 +0.5
3,106,922 + ECD_02958 0.55 -0.2
3,107,020 + ECD_02958 0.62 -0.6
3,107,020 + ECD_02958 0.62 +0.2
3,107,021 - ECD_02958 0.62 -0.4
3,107,021 - ECD_02958 0.62 -2.0
3,107,065 - ECD_02958 0.66 +2.7
3,107,100 + ECD_02958 0.69 -1.0
3,107,100 + ECD_02958 0.69 +0.6
3,107,100 + ECD_02958 0.69 -0.4
3,107,100 + ECD_02958 0.69 -0.4
3,107,105 - ECD_02958 0.69 +0.2
3,107,115 + ECD_02958 0.70 -0.2
3,107,116 - ECD_02958 0.70 -0.6
3,107,164 - ECD_02958 0.74 -1.0
3,107,190 + ECD_02958 0.76 +0.1
3,107,190 + ECD_02958 0.76 +0.3
3,107,190 + ECD_02958 0.76 -0.3
3,107,310 + ECD_02958 0.86 -0.4
3,107,313 + ECD_02958 0.86 +0.0
3,107,313 + ECD_02958 0.86 -0.8
3,107,314 - ECD_02958 0.86 +1.0
3,107,314 - ECD_02958 0.86 +1.8
3,107,314 - ECD_02958 0.86 +0.7
3,107,314 - ECD_02958 0.86 +0.0
3,107,314 - ECD_02958 0.86 -1.6
3,107,323 - ECD_02958 0.87 -0.2
3,107,482 - +0.1
3,107,482 - +0.3
3,107,725 + ECD_02959 0.42 +0.5
3,107,753 + ECD_02959 0.47 +0.6
3,107,754 - ECD_02959 0.47 -0.2
3,107,754 - ECD_02959 0.47 +1.0
3,107,754 - ECD_02959 0.47 +1.4
3,107,826 - ECD_02959 0.61 +0.4
3,107,840 + ECD_02959 0.63 -0.1
3,107,840 + ECD_02959 0.63 -0.5
3,107,841 - ECD_02959 0.63 +0.8
3,107,845 + ECD_02959 0.64 +0.8
3,107,845 + ECD_02959 0.64 +0.0
3,107,846 - ECD_02959 0.64 -0.2
3,107,846 - ECD_02959 0.64 -0.2
3,107,854 + ECD_02959 0.66 +0.8
3,107,854 + ECD_02959 0.66 -0.3
3,107,855 - ECD_02959 0.66 +0.4
3,107,855 - ECD_02959 0.66 -0.1
3,107,933 - ECD_02959 0.80 -1.1
3,107,934 + ECD_02959 0.80 -0.1
3,108,047 - +0.2
3,108,055 - +0.0
3,108,127 + +0.4
3,108,129 + -0.1
3,108,135 + +0.3
3,108,390 - ECD_02960 0.18 +0.4
3,108,390 - ECD_02960 0.18 -0.2
3,108,447 + ECD_02960 0.22 +0.7
3,108,447 + ECD_02960 0.22 -1.8
3,108,448 - ECD_02960 0.22 +0.4
3,108,448 - ECD_02960 0.22 +0.2
3,108,527 + ECD_02960 0.27 +0.3
3,108,595 + ECD_02960 0.32 +0.7
3,108,596 - ECD_02960 0.32 -0.4
3,108,618 - ECD_02960 0.33 +1.0
3,108,622 + ECD_02960 0.33 +0.3
3,108,622 + ECD_02960 0.33 -0.1
3,108,623 - ECD_02960 0.33 +0.4
3,108,795 - ECD_02960 0.45 -1.1
3,108,889 + ECD_02960 0.51 -0.0
3,108,889 + ECD_02960 0.51 +0.5
3,108,889 + ECD_02960 0.51 -0.1
3,108,889 + ECD_02960 0.51 -0.8
3,108,890 - ECD_02960 0.51 -1.0
3,108,890 - ECD_02960 0.51 +0.0

Or see this region's nucleotide sequence