Strain Fitness in Escherichia coli BL21 around ECD_02638

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02636 and ECD_02637 overlap by 1 nucleotidesECD_02637 and ECD_02638 are separated by 621 nucleotidesECD_02638 and ECD_02639 are separated by 67 nucleotides ECD_02636: ECD_02636 - tRNA(Ile1,Asp) pseudouridine(65) synthase, at 2,755,592 to 2,756,374 _02636 ECD_02637: ECD_02637 - DUF446 family protein, at 2,756,374 to 2,756,703 _02637 ECD_02638: ECD_02638 - SecY-interacting protein, at 2,757,325 to 2,757,870 _02638 ECD_02639: ECD_02639 - 7-cyano-7-deazaguanine reductase (NADPH-dependent), at 2,757,938 to 2,758,786 _02639 Position (kb) 2757 2758Strain fitness (log2 ratio) -2 -1 0 1 2at 2756.330 kb on - strandat 2756.330 kb on - strandat 2756.358 kb on + strandat 2756.359 kb on - strandat 2756.359 kb on - strandat 2756.359 kb on - strandat 2756.363 kb on + strandat 2756.363 kb on + strandat 2756.363 kb on + strandat 2756.364 kb on - strandat 2756.364 kb on - strandat 2756.364 kb on - strandat 2756.364 kb on - strandat 2756.364 kb on - strandat 2756.375 kb on + strandat 2756.375 kb on + strandat 2756.375 kb on + strandat 2756.375 kb on + strandat 2756.375 kb on + strandat 2756.427 kb on + strand, within ECD_02637at 2756.427 kb on + strand, within ECD_02637at 2756.427 kb on + strand, within ECD_02637at 2756.468 kb on + strand, within ECD_02637at 2756.468 kb on + strand, within ECD_02637at 2756.469 kb on - strand, within ECD_02637at 2756.471 kb on + strand, within ECD_02637at 2756.472 kb on - strand, within ECD_02637at 2756.472 kb on - strand, within ECD_02637at 2756.472 kb on - strand, within ECD_02637at 2756.472 kb on - strand, within ECD_02637at 2756.472 kb on - strand, within ECD_02637at 2756.511 kb on + strand, within ECD_02637at 2756.515 kb on + strand, within ECD_02637at 2756.596 kb on - strand, within ECD_02637at 2756.596 kb on - strand, within ECD_02637at 2756.598 kb on + strand, within ECD_02637at 2756.599 kb on - strand, within ECD_02637at 2756.599 kb on - strand, within ECD_02637at 2756.601 kb on + strand, within ECD_02637at 2756.601 kb on + strand, within ECD_02637at 2756.601 kb on + strand, within ECD_02637at 2756.602 kb on - strand, within ECD_02637at 2756.602 kb on - strand, within ECD_02637at 2756.602 kb on - strand, within ECD_02637at 2756.703 kb on + strandat 2756.703 kb on + strandat 2756.704 kb on - strandat 2756.704 kb on - strandat 2756.704 kb on - strandat 2756.718 kb on - strandat 2756.740 kb on - strandat 2756.766 kb on + strandat 2756.767 kb on - strandat 2756.767 kb on - strandat 2756.806 kb on - strandat 2756.806 kb on - strandat 2756.876 kb on + strandat 2756.877 kb on - strandat 2756.877 kb on - strandat 2756.877 kb on - strandat 2756.877 kb on - strandat 2756.877 kb on - strandat 2756.877 kb on - strandat 2756.908 kb on + strandat 2756.908 kb on + strandat 2756.908 kb on + strandat 2756.908 kb on + strandat 2756.908 kb on + strandat 2756.909 kb on - strandat 2756.909 kb on - strandat 2756.909 kb on - strandat 2756.909 kb on - strandat 2756.909 kb on - strandat 2756.909 kb on - strandat 2757.120 kb on + strandat 2757.121 kb on - strandat 2757.121 kb on - strandat 2757.121 kb on - strandat 2757.121 kb on - strandat 2757.121 kb on - strandat 2757.145 kb on + strandat 2757.254 kb on - strandat 2757.318 kb on - strandat 2757.339 kb on + strandat 2757.339 kb on + strandat 2757.387 kb on + strand, within ECD_02638at 2757.388 kb on - strand, within ECD_02638at 2757.388 kb on - strand, within ECD_02638at 2757.430 kb on - strand, within ECD_02638at 2757.430 kb on - strand, within ECD_02638at 2757.430 kb on - strand, within ECD_02638at 2757.449 kb on - strand, within ECD_02638at 2757.449 kb on - strand, within ECD_02638at 2757.449 kb on - strand, within ECD_02638at 2757.472 kb on - strand, within ECD_02638at 2757.476 kb on - strand, within ECD_02638at 2757.476 kb on - strand, within ECD_02638at 2757.476 kb on - strand, within ECD_02638at 2757.476 kb on - strand, within ECD_02638at 2757.476 kb on - strand, within ECD_02638at 2757.627 kb on + strand, within ECD_02638at 2757.627 kb on + strand, within ECD_02638at 2757.628 kb on - strand, within ECD_02638at 2757.628 kb on - strand, within ECD_02638at 2757.628 kb on - strand, within ECD_02638at 2757.629 kb on + strand, within ECD_02638at 2757.630 kb on - strand, within ECD_02638at 2757.630 kb on - strand, within ECD_02638at 2757.630 kb on - strand, within ECD_02638at 2757.637 kb on - strand, within ECD_02638at 2757.652 kb on + strand, within ECD_02638at 2757.652 kb on + strand, within ECD_02638at 2757.686 kb on - strand, within ECD_02638at 2757.723 kb on - strand, within ECD_02638at 2757.725 kb on - strand, within ECD_02638at 2757.725 kb on - strand, within ECD_02638at 2757.747 kb on + strand, within ECD_02638at 2757.748 kb on - strand, within ECD_02638at 2757.770 kb on + strand, within ECD_02638at 2757.798 kb on + strand, within ECD_02638at 2757.798 kb on + strand, within ECD_02638at 2757.799 kb on - strand, within ECD_02638at 2757.871 kb on + strandat 2757.872 kb on - strandat 2757.872 kb on - strandat 2757.897 kb on + strandat 2757.897 kb on + strandat 2757.897 kb on + strandat 2757.897 kb on + strandat 2757.897 kb on + strandat 2757.898 kb on - strandat 2757.898 kb on - strandat 2757.898 kb on - strandat 2757.898 kb on - strandat 2757.898 kb on - strandat 2757.898 kb on - strandat 2757.911 kb on - strandat 2758.010 kb on + strandat 2758.011 kb on - strandat 2758.115 kb on + strand, within ECD_02639at 2758.181 kb on + strand, within ECD_02639at 2758.181 kb on + strand, within ECD_02639at 2758.181 kb on + strand, within ECD_02639at 2758.191 kb on + strand, within ECD_02639at 2758.217 kb on - strand, within ECD_02639at 2758.223 kb on + strand, within ECD_02639at 2758.223 kb on + strand, within ECD_02639at 2758.223 kb on + strand, within ECD_02639at 2758.224 kb on - strand, within ECD_02639at 2758.237 kb on + strand, within ECD_02639at 2758.253 kb on - strand, within ECD_02639at 2758.293 kb on + strand, within ECD_02639at 2758.293 kb on + strand, within ECD_02639at 2758.293 kb on + strand, within ECD_02639at 2758.294 kb on - strand, within ECD_02639at 2758.294 kb on - strand, within ECD_02639at 2758.294 kb on - strand, within ECD_02639at 2758.330 kb on - strand, within ECD_02639at 2758.330 kb on - strand, within ECD_02639at 2758.330 kb on - strand, within ECD_02639at 2758.331 kb on + strand, within ECD_02639at 2758.373 kb on - strand, within ECD_02639at 2758.415 kb on + strand, within ECD_02639at 2758.415 kb on + strand, within ECD_02639at 2758.415 kb on + strand, within ECD_02639at 2758.415 kb on + strand, within ECD_02639at 2758.415 kb on + strand, within ECD_02639at 2758.415 kb on + strand, within ECD_02639at 2758.415 kb on + strand, within ECD_02639at 2758.415 kb on + strand, within ECD_02639at 2758.416 kb on - strand, within ECD_02639at 2758.416 kb on - strand, within ECD_02639at 2758.416 kb on - strand, within ECD_02639at 2758.416 kb on - strand, within ECD_02639at 2758.416 kb on - strand, within ECD_02639at 2758.433 kb on + strand, within ECD_02639at 2758.433 kb on + strand, within ECD_02639at 2758.464 kb on + strand, within ECD_02639at 2758.465 kb on - strand, within ECD_02639at 2758.648 kb on + strand, within ECD_02639at 2758.648 kb on + strand, within ECD_02639at 2758.649 kb on - strand, within ECD_02639at 2758.660 kb on - strand, within ECD_02639at 2758.701 kb on - strand, within ECD_02639at 2758.702 kb on + strandat 2758.703 kb on - strandat 2758.726 kb on + strandat 2758.742 kb on - strandat 2758.855 kb on + strandat 2758.855 kb on + strandat 2758.855 kb on + strandat 2758.855 kb on + strandat 2758.856 kb on - strandat 2758.856 kb on - strandat 2758.856 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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2,756,330 - -0.9
2,756,330 - +0.1
2,756,358 + +0.6
2,756,359 - -0.5
2,756,359 - -0.1
2,756,359 - +0.9
2,756,363 + +0.7
2,756,363 + +0.5
2,756,363 + -0.3
2,756,364 - +1.7
2,756,364 - -1.0
2,756,364 - -0.1
2,756,364 - -1.7
2,756,364 - +0.4
2,756,375 + +0.3
2,756,375 + +0.3
2,756,375 + -0.4
2,756,375 + +0.6
2,756,375 + +1.1
2,756,427 + ECD_02637 0.16 +0.8
2,756,427 + ECD_02637 0.16 -0.7
2,756,427 + ECD_02637 0.16 -0.4
2,756,468 + ECD_02637 0.28 +0.3
2,756,468 + ECD_02637 0.28 -2.3
2,756,469 - ECD_02637 0.29 -0.3
2,756,471 + ECD_02637 0.29 -0.2
2,756,472 - ECD_02637 0.30 -0.7
2,756,472 - ECD_02637 0.30 +0.8
2,756,472 - ECD_02637 0.30 +1.0
2,756,472 - ECD_02637 0.30 -0.5
2,756,472 - ECD_02637 0.30 +0.3
2,756,511 + ECD_02637 0.42 -0.4
2,756,515 + ECD_02637 0.43 +0.3
2,756,596 - ECD_02637 0.67 -0.2
2,756,596 - ECD_02637 0.67 +2.0
2,756,598 + ECD_02637 0.68 +0.6
2,756,599 - ECD_02637 0.68 +0.8
2,756,599 - ECD_02637 0.68 -0.2
2,756,601 + ECD_02637 0.69 +0.3
2,756,601 + ECD_02637 0.69 +0.5
2,756,601 + ECD_02637 0.69 -0.7
2,756,602 - ECD_02637 0.69 -0.3
2,756,602 - ECD_02637 0.69 +0.4
2,756,602 - ECD_02637 0.69 -0.3
2,756,703 + -0.3
2,756,703 + +0.6
2,756,704 - +1.3
2,756,704 - -0.5
2,756,704 - +0.0
2,756,718 - +0.4
2,756,740 - +0.2
2,756,766 + +0.3
2,756,767 - +0.2
2,756,767 - -0.1
2,756,806 - +0.7
2,756,806 - -1.0
2,756,876 + +1.8
2,756,877 - -0.1
2,756,877 - +0.6
2,756,877 - +0.7
2,756,877 - -0.6
2,756,877 - -0.7
2,756,877 - +1.3
2,756,908 + +0.3
2,756,908 + +0.4
2,756,908 + +0.6
2,756,908 + -1.2
2,756,908 + -0.4
2,756,909 - +1.3
2,756,909 - -0.3
2,756,909 - +1.3
2,756,909 - +1.3
2,756,909 - -1.4
2,756,909 - -0.2
2,757,120 + +0.5
2,757,121 - -1.2
2,757,121 - +0.3
2,757,121 - +1.3
2,757,121 - +1.1
2,757,121 - +0.4
2,757,145 + +0.6
2,757,254 - -0.2
2,757,318 - +0.2
2,757,339 + +1.0
2,757,339 + +0.7
2,757,387 + ECD_02638 0.11 -0.1
2,757,388 - ECD_02638 0.12 +0.6
2,757,388 - ECD_02638 0.12 +0.1
2,757,430 - ECD_02638 0.19 +0.2
2,757,430 - ECD_02638 0.19 +0.3
2,757,430 - ECD_02638 0.19 -1.0
2,757,449 - ECD_02638 0.23 -0.5
2,757,449 - ECD_02638 0.23 -0.8
2,757,449 - ECD_02638 0.23 -0.6
2,757,472 - ECD_02638 0.27 +0.4
2,757,476 - ECD_02638 0.28 -2.1
2,757,476 - ECD_02638 0.28 +2.0
2,757,476 - ECD_02638 0.28 -0.3
2,757,476 - ECD_02638 0.28 +0.0
2,757,476 - ECD_02638 0.28 -0.3
2,757,627 + ECD_02638 0.55 -1.6
2,757,627 + ECD_02638 0.55 +0.3
2,757,628 - ECD_02638 0.55 -0.8
2,757,628 - ECD_02638 0.55 +0.1
2,757,628 - ECD_02638 0.55 -0.4
2,757,629 + ECD_02638 0.56 +0.2
2,757,630 - ECD_02638 0.56 -0.7
2,757,630 - ECD_02638 0.56 -0.7
2,757,630 - ECD_02638 0.56 +1.0
2,757,637 - ECD_02638 0.57 -0.4
2,757,652 + ECD_02638 0.60 -0.5
2,757,652 + ECD_02638 0.60 -1.6
2,757,686 - ECD_02638 0.66 -0.3
2,757,723 - ECD_02638 0.73 +0.7
2,757,725 - ECD_02638 0.73 -1.6
2,757,725 - ECD_02638 0.73 +0.3
2,757,747 + ECD_02638 0.77 +0.1
2,757,748 - ECD_02638 0.77 +0.6
2,757,770 + ECD_02638 0.82 +1.4
2,757,798 + ECD_02638 0.87 -1.0
2,757,798 + ECD_02638 0.87 +0.7
2,757,799 - ECD_02638 0.87 -0.2
2,757,871 + +0.7
2,757,872 - -0.3
2,757,872 - -0.3
2,757,897 + +0.4
2,757,897 + -0.2
2,757,897 + -1.0
2,757,897 + -1.2
2,757,897 + +1.0
2,757,898 - +0.1
2,757,898 - +0.1
2,757,898 - +0.4
2,757,898 - -0.6
2,757,898 - +1.1
2,757,898 - -0.7
2,757,911 - -0.6
2,758,010 + -0.1
2,758,011 - -0.1
2,758,115 + ECD_02639 0.21 +0.7
2,758,181 + ECD_02639 0.29 +0.6
2,758,181 + ECD_02639 0.29 -0.7
2,758,181 + ECD_02639 0.29 +0.5
2,758,191 + ECD_02639 0.30 -1.4
2,758,217 - ECD_02639 0.33 -1.1
2,758,223 + ECD_02639 0.34 -0.1
2,758,223 + ECD_02639 0.34 +0.9
2,758,223 + ECD_02639 0.34 +0.0
2,758,224 - ECD_02639 0.34 +1.1
2,758,237 + ECD_02639 0.35 +1.8
2,758,253 - ECD_02639 0.37 +0.0
2,758,293 + ECD_02639 0.42 +0.9
2,758,293 + ECD_02639 0.42 +0.3
2,758,293 + ECD_02639 0.42 -0.1
2,758,294 - ECD_02639 0.42 -0.1
2,758,294 - ECD_02639 0.42 -1.7
2,758,294 - ECD_02639 0.42 +0.1
2,758,330 - ECD_02639 0.46 +1.9
2,758,330 - ECD_02639 0.46 -1.1
2,758,330 - ECD_02639 0.46 +0.6
2,758,331 + ECD_02639 0.46 +0.7
2,758,373 - ECD_02639 0.51 -1.3
2,758,415 + ECD_02639 0.56 +0.3
2,758,415 + ECD_02639 0.56 +0.3
2,758,415 + ECD_02639 0.56 -0.3
2,758,415 + ECD_02639 0.56 -0.3
2,758,415 + ECD_02639 0.56 +0.9
2,758,415 + ECD_02639 0.56 +0.6
2,758,415 + ECD_02639 0.56 -0.1
2,758,415 + ECD_02639 0.56 -2.4
2,758,416 - ECD_02639 0.56 +0.1
2,758,416 - ECD_02639 0.56 -0.4
2,758,416 - ECD_02639 0.56 +0.3
2,758,416 - ECD_02639 0.56 +0.4
2,758,416 - ECD_02639 0.56 -0.3
2,758,433 + ECD_02639 0.58 -0.1
2,758,433 + ECD_02639 0.58 -0.2
2,758,464 + ECD_02639 0.62 +0.5
2,758,465 - ECD_02639 0.62 +0.3
2,758,648 + ECD_02639 0.84 +0.6
2,758,648 + ECD_02639 0.84 -0.3
2,758,649 - ECD_02639 0.84 +0.7
2,758,660 - ECD_02639 0.85 +0.4
2,758,701 - ECD_02639 0.90 +0.4
2,758,702 + -0.3
2,758,703 - +0.8
2,758,726 + +0.2
2,758,742 - -0.5
2,758,855 + +0.2
2,758,855 + +0.4
2,758,855 + -1.1
2,758,855 + -1.1
2,758,856 - +0.4
2,758,856 - -0.0
2,758,856 - -1.5

Or see this region's nucleotide sequence