Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02636 and ECD_02637 overlap by 1 nucleotides ECD_02637 and ECD_02638 are separated by 621 nucleotides ECD_02638 and ECD_02639 are separated by 67 nucleotides
ECD_02636: ECD_02636 - tRNA(Ile1,Asp) pseudouridine(65) synthase, at 2,755,592 to 2,756,374
_02636
ECD_02637: ECD_02637 - DUF446 family protein, at 2,756,374 to 2,756,703
_02637
ECD_02638: ECD_02638 - SecY-interacting protein, at 2,757,325 to 2,757,870
_02638
ECD_02639: ECD_02639 - 7-cyano-7-deazaguanine reductase (NADPH-dependent), at 2,757,938 to 2,758,786
_02639
Position (kb)
2757
2758 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2756.330 kb on - strand at 2756.330 kb on - strand at 2756.358 kb on + strand at 2756.359 kb on - strand at 2756.359 kb on - strand at 2756.359 kb on - strand at 2756.363 kb on + strand at 2756.363 kb on + strand at 2756.363 kb on + strand at 2756.364 kb on - strand at 2756.364 kb on - strand at 2756.364 kb on - strand at 2756.364 kb on - strand at 2756.364 kb on - strand at 2756.375 kb on + strand at 2756.375 kb on + strand at 2756.375 kb on + strand at 2756.375 kb on + strand at 2756.375 kb on + strand at 2756.427 kb on + strand, within ECD_02637 at 2756.427 kb on + strand, within ECD_02637 at 2756.427 kb on + strand, within ECD_02637 at 2756.468 kb on + strand, within ECD_02637 at 2756.468 kb on + strand, within ECD_02637 at 2756.469 kb on - strand, within ECD_02637 at 2756.471 kb on + strand, within ECD_02637 at 2756.472 kb on - strand, within ECD_02637 at 2756.472 kb on - strand, within ECD_02637 at 2756.472 kb on - strand, within ECD_02637 at 2756.472 kb on - strand, within ECD_02637 at 2756.472 kb on - strand, within ECD_02637 at 2756.511 kb on + strand, within ECD_02637 at 2756.515 kb on + strand, within ECD_02637 at 2756.596 kb on - strand, within ECD_02637 at 2756.596 kb on - strand, within ECD_02637 at 2756.598 kb on + strand, within ECD_02637 at 2756.599 kb on - strand, within ECD_02637 at 2756.599 kb on - strand, within ECD_02637 at 2756.601 kb on + strand, within ECD_02637 at 2756.601 kb on + strand, within ECD_02637 at 2756.601 kb on + strand, within ECD_02637 at 2756.602 kb on - strand, within ECD_02637 at 2756.602 kb on - strand, within ECD_02637 at 2756.602 kb on - strand, within ECD_02637 at 2756.703 kb on + strand at 2756.703 kb on + strand at 2756.704 kb on - strand at 2756.704 kb on - strand at 2756.704 kb on - strand at 2756.718 kb on - strand at 2756.740 kb on - strand at 2756.766 kb on + strand at 2756.767 kb on - strand at 2756.767 kb on - strand at 2756.806 kb on - strand at 2756.806 kb on - strand at 2756.876 kb on + strand at 2756.877 kb on - strand at 2756.877 kb on - strand at 2756.877 kb on - strand at 2756.877 kb on - strand at 2756.877 kb on - strand at 2756.877 kb on - strand at 2756.908 kb on + strand at 2756.908 kb on + strand at 2756.908 kb on + strand at 2756.908 kb on + strand at 2756.908 kb on + strand at 2756.909 kb on - strand at 2756.909 kb on - strand at 2756.909 kb on - strand at 2756.909 kb on - strand at 2756.909 kb on - strand at 2756.909 kb on - strand at 2757.120 kb on + strand at 2757.121 kb on - strand at 2757.121 kb on - strand at 2757.121 kb on - strand at 2757.121 kb on - strand at 2757.121 kb on - strand at 2757.145 kb on + strand at 2757.254 kb on - strand at 2757.318 kb on - strand at 2757.339 kb on + strand at 2757.339 kb on + strand at 2757.387 kb on + strand, within ECD_02638 at 2757.388 kb on - strand, within ECD_02638 at 2757.388 kb on - strand, within ECD_02638 at 2757.430 kb on - strand, within ECD_02638 at 2757.430 kb on - strand, within ECD_02638 at 2757.430 kb on - strand, within ECD_02638 at 2757.449 kb on - strand, within ECD_02638 at 2757.449 kb on - strand, within ECD_02638 at 2757.449 kb on - strand, within ECD_02638 at 2757.472 kb on - strand, within ECD_02638 at 2757.476 kb on - strand, within ECD_02638 at 2757.476 kb on - strand, within ECD_02638 at 2757.476 kb on - strand, within ECD_02638 at 2757.476 kb on - strand, within ECD_02638 at 2757.476 kb on - strand, within ECD_02638 at 2757.627 kb on + strand, within ECD_02638 at 2757.627 kb on + strand, within ECD_02638 at 2757.628 kb on - strand, within ECD_02638 at 2757.628 kb on - strand, within ECD_02638 at 2757.628 kb on - strand, within ECD_02638 at 2757.629 kb on + strand, within ECD_02638 at 2757.630 kb on - strand, within ECD_02638 at 2757.630 kb on - strand, within ECD_02638 at 2757.630 kb on - strand, within ECD_02638 at 2757.637 kb on - strand, within ECD_02638 at 2757.652 kb on + strand, within ECD_02638 at 2757.652 kb on + strand, within ECD_02638 at 2757.686 kb on - strand, within ECD_02638 at 2757.723 kb on - strand, within ECD_02638 at 2757.725 kb on - strand, within ECD_02638 at 2757.725 kb on - strand, within ECD_02638 at 2757.747 kb on + strand, within ECD_02638 at 2757.748 kb on - strand, within ECD_02638 at 2757.770 kb on + strand, within ECD_02638 at 2757.798 kb on + strand, within ECD_02638 at 2757.798 kb on + strand, within ECD_02638 at 2757.799 kb on - strand, within ECD_02638 at 2757.871 kb on + strand at 2757.872 kb on - strand at 2757.872 kb on - strand at 2757.897 kb on + strand at 2757.897 kb on + strand at 2757.897 kb on + strand at 2757.897 kb on + strand at 2757.897 kb on + strand at 2757.898 kb on - strand at 2757.898 kb on - strand at 2757.898 kb on - strand at 2757.898 kb on - strand at 2757.898 kb on - strand at 2757.898 kb on - strand at 2757.911 kb on - strand at 2758.010 kb on + strand at 2758.011 kb on - strand at 2758.115 kb on + strand, within ECD_02639 at 2758.181 kb on + strand, within ECD_02639 at 2758.181 kb on + strand, within ECD_02639 at 2758.181 kb on + strand, within ECD_02639 at 2758.191 kb on + strand, within ECD_02639 at 2758.217 kb on - strand, within ECD_02639 at 2758.223 kb on + strand, within ECD_02639 at 2758.223 kb on + strand, within ECD_02639 at 2758.223 kb on + strand, within ECD_02639 at 2758.224 kb on - strand, within ECD_02639 at 2758.237 kb on + strand, within ECD_02639 at 2758.253 kb on - strand, within ECD_02639 at 2758.293 kb on + strand, within ECD_02639 at 2758.293 kb on + strand, within ECD_02639 at 2758.293 kb on + strand, within ECD_02639 at 2758.294 kb on - strand, within ECD_02639 at 2758.294 kb on - strand, within ECD_02639 at 2758.294 kb on - strand, within ECD_02639 at 2758.330 kb on - strand, within ECD_02639 at 2758.330 kb on - strand, within ECD_02639 at 2758.330 kb on - strand, within ECD_02639 at 2758.331 kb on + strand, within ECD_02639 at 2758.373 kb on - strand, within ECD_02639 at 2758.415 kb on + strand, within ECD_02639 at 2758.415 kb on + strand, within ECD_02639 at 2758.415 kb on + strand, within ECD_02639 at 2758.415 kb on + strand, within ECD_02639 at 2758.415 kb on + strand, within ECD_02639 at 2758.415 kb on + strand, within ECD_02639 at 2758.415 kb on + strand, within ECD_02639 at 2758.415 kb on + strand, within ECD_02639 at 2758.416 kb on - strand, within ECD_02639 at 2758.416 kb on - strand, within ECD_02639 at 2758.416 kb on - strand, within ECD_02639 at 2758.416 kb on - strand, within ECD_02639 at 2758.416 kb on - strand, within ECD_02639 at 2758.433 kb on + strand, within ECD_02639 at 2758.433 kb on + strand, within ECD_02639 at 2758.464 kb on + strand, within ECD_02639 at 2758.465 kb on - strand, within ECD_02639 at 2758.648 kb on + strand, within ECD_02639 at 2758.648 kb on + strand, within ECD_02639 at 2758.649 kb on - strand, within ECD_02639 at 2758.660 kb on - strand, within ECD_02639 at 2758.701 kb on - strand, within ECD_02639 at 2758.702 kb on + strand at 2758.703 kb on - strand at 2758.726 kb on + strand at 2758.742 kb on - strand at 2758.855 kb on + strand at 2758.855 kb on + strand at 2758.855 kb on + strand at 2758.855 kb on + strand at 2758.856 kb on - strand at 2758.856 kb on - strand at 2758.856 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 2,756,330 - -0.9 2,756,330 - +0.1 2,756,358 + +0.6 2,756,359 - -0.5 2,756,359 - -0.1 2,756,359 - +0.9 2,756,363 + +0.7 2,756,363 + +0.5 2,756,363 + -0.3 2,756,364 - +1.7 2,756,364 - -1.0 2,756,364 - -0.1 2,756,364 - -1.7 2,756,364 - +0.4 2,756,375 + +0.3 2,756,375 + +0.3 2,756,375 + -0.4 2,756,375 + +0.6 2,756,375 + +1.1 2,756,427 + ECD_02637 0.16 +0.8 2,756,427 + ECD_02637 0.16 -0.7 2,756,427 + ECD_02637 0.16 -0.4 2,756,468 + ECD_02637 0.28 +0.3 2,756,468 + ECD_02637 0.28 -2.3 2,756,469 - ECD_02637 0.29 -0.3 2,756,471 + ECD_02637 0.29 -0.2 2,756,472 - ECD_02637 0.30 -0.7 2,756,472 - ECD_02637 0.30 +0.8 2,756,472 - ECD_02637 0.30 +1.0 2,756,472 - ECD_02637 0.30 -0.5 2,756,472 - ECD_02637 0.30 +0.3 2,756,511 + ECD_02637 0.42 -0.4 2,756,515 + ECD_02637 0.43 +0.3 2,756,596 - ECD_02637 0.67 -0.2 2,756,596 - ECD_02637 0.67 +2.0 2,756,598 + ECD_02637 0.68 +0.6 2,756,599 - ECD_02637 0.68 +0.8 2,756,599 - ECD_02637 0.68 -0.2 2,756,601 + ECD_02637 0.69 +0.3 2,756,601 + ECD_02637 0.69 +0.5 2,756,601 + ECD_02637 0.69 -0.7 2,756,602 - ECD_02637 0.69 -0.3 2,756,602 - ECD_02637 0.69 +0.4 2,756,602 - ECD_02637 0.69 -0.3 2,756,703 + -0.3 2,756,703 + +0.6 2,756,704 - +1.3 2,756,704 - -0.5 2,756,704 - +0.0 2,756,718 - +0.4 2,756,740 - +0.2 2,756,766 + +0.3 2,756,767 - +0.2 2,756,767 - -0.1 2,756,806 - +0.7 2,756,806 - -1.0 2,756,876 + +1.8 2,756,877 - -0.1 2,756,877 - +0.6 2,756,877 - +0.7 2,756,877 - -0.6 2,756,877 - -0.7 2,756,877 - +1.3 2,756,908 + +0.3 2,756,908 + +0.4 2,756,908 + +0.6 2,756,908 + -1.2 2,756,908 + -0.4 2,756,909 - +1.3 2,756,909 - -0.3 2,756,909 - +1.3 2,756,909 - +1.3 2,756,909 - -1.4 2,756,909 - -0.2 2,757,120 + +0.5 2,757,121 - -1.2 2,757,121 - +0.3 2,757,121 - +1.3 2,757,121 - +1.1 2,757,121 - +0.4 2,757,145 + +0.6 2,757,254 - -0.2 2,757,318 - +0.2 2,757,339 + +1.0 2,757,339 + +0.7 2,757,387 + ECD_02638 0.11 -0.1 2,757,388 - ECD_02638 0.12 +0.6 2,757,388 - ECD_02638 0.12 +0.1 2,757,430 - ECD_02638 0.19 +0.2 2,757,430 - ECD_02638 0.19 +0.3 2,757,430 - ECD_02638 0.19 -1.0 2,757,449 - ECD_02638 0.23 -0.5 2,757,449 - ECD_02638 0.23 -0.8 2,757,449 - ECD_02638 0.23 -0.6 2,757,472 - ECD_02638 0.27 +0.4 2,757,476 - ECD_02638 0.28 -2.1 2,757,476 - ECD_02638 0.28 +2.0 2,757,476 - ECD_02638 0.28 -0.3 2,757,476 - ECD_02638 0.28 +0.0 2,757,476 - ECD_02638 0.28 -0.3 2,757,627 + ECD_02638 0.55 -1.6 2,757,627 + ECD_02638 0.55 +0.3 2,757,628 - ECD_02638 0.55 -0.8 2,757,628 - ECD_02638 0.55 +0.1 2,757,628 - ECD_02638 0.55 -0.4 2,757,629 + ECD_02638 0.56 +0.2 2,757,630 - ECD_02638 0.56 -0.7 2,757,630 - ECD_02638 0.56 -0.7 2,757,630 - ECD_02638 0.56 +1.0 2,757,637 - ECD_02638 0.57 -0.4 2,757,652 + ECD_02638 0.60 -0.5 2,757,652 + ECD_02638 0.60 -1.6 2,757,686 - ECD_02638 0.66 -0.3 2,757,723 - ECD_02638 0.73 +0.7 2,757,725 - ECD_02638 0.73 -1.6 2,757,725 - ECD_02638 0.73 +0.3 2,757,747 + ECD_02638 0.77 +0.1 2,757,748 - ECD_02638 0.77 +0.6 2,757,770 + ECD_02638 0.82 +1.4 2,757,798 + ECD_02638 0.87 -1.0 2,757,798 + ECD_02638 0.87 +0.7 2,757,799 - ECD_02638 0.87 -0.2 2,757,871 + +0.7 2,757,872 - -0.3 2,757,872 - -0.3 2,757,897 + +0.4 2,757,897 + -0.2 2,757,897 + -1.0 2,757,897 + -1.2 2,757,897 + +1.0 2,757,898 - +0.1 2,757,898 - +0.1 2,757,898 - +0.4 2,757,898 - -0.6 2,757,898 - +1.1 2,757,898 - -0.7 2,757,911 - -0.6 2,758,010 + -0.1 2,758,011 - -0.1 2,758,115 + ECD_02639 0.21 +0.7 2,758,181 + ECD_02639 0.29 +0.6 2,758,181 + ECD_02639 0.29 -0.7 2,758,181 + ECD_02639 0.29 +0.5 2,758,191 + ECD_02639 0.30 -1.4 2,758,217 - ECD_02639 0.33 -1.1 2,758,223 + ECD_02639 0.34 -0.1 2,758,223 + ECD_02639 0.34 +0.9 2,758,223 + ECD_02639 0.34 +0.0 2,758,224 - ECD_02639 0.34 +1.1 2,758,237 + ECD_02639 0.35 +1.8 2,758,253 - ECD_02639 0.37 +0.0 2,758,293 + ECD_02639 0.42 +0.9 2,758,293 + ECD_02639 0.42 +0.3 2,758,293 + ECD_02639 0.42 -0.1 2,758,294 - ECD_02639 0.42 -0.1 2,758,294 - ECD_02639 0.42 -1.7 2,758,294 - ECD_02639 0.42 +0.1 2,758,330 - ECD_02639 0.46 +1.9 2,758,330 - ECD_02639 0.46 -1.1 2,758,330 - ECD_02639 0.46 +0.6 2,758,331 + ECD_02639 0.46 +0.7 2,758,373 - ECD_02639 0.51 -1.3 2,758,415 + ECD_02639 0.56 +0.3 2,758,415 + ECD_02639 0.56 +0.3 2,758,415 + ECD_02639 0.56 -0.3 2,758,415 + ECD_02639 0.56 -0.3 2,758,415 + ECD_02639 0.56 +0.9 2,758,415 + ECD_02639 0.56 +0.6 2,758,415 + ECD_02639 0.56 -0.1 2,758,415 + ECD_02639 0.56 -2.4 2,758,416 - ECD_02639 0.56 +0.1 2,758,416 - ECD_02639 0.56 -0.4 2,758,416 - ECD_02639 0.56 +0.3 2,758,416 - ECD_02639 0.56 +0.4 2,758,416 - ECD_02639 0.56 -0.3 2,758,433 + ECD_02639 0.58 -0.1 2,758,433 + ECD_02639 0.58 -0.2 2,758,464 + ECD_02639 0.62 +0.5 2,758,465 - ECD_02639 0.62 +0.3 2,758,648 + ECD_02639 0.84 +0.6 2,758,648 + ECD_02639 0.84 -0.3 2,758,649 - ECD_02639 0.84 +0.7 2,758,660 - ECD_02639 0.85 +0.4 2,758,701 - ECD_02639 0.90 +0.4 2,758,702 + -0.3 2,758,703 - +0.8 2,758,726 + +0.2 2,758,742 - -0.5 2,758,855 + +0.2 2,758,855 + +0.4 2,758,855 + -1.1 2,758,855 + -1.1 2,758,856 - +0.4 2,758,856 - -0.0 2,758,856 - -1.5
Or see this region's nucleotide sequence