Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02634 and ECD_02635 are separated by 434 nucleotides ECD_02635 and ECD_02636 are separated by 17 nucleotides ECD_02636 and ECD_02637 overlap by 1 nucleotides ECD_02637 and ECD_02638 are separated by 621 nucleotides
ECD_02634: ECD_02634 - putative D-glucarate transporter, at 2,753,338 to 2,754,690
_02634
ECD_02635: ECD_02635 - short-chain flavodoxin, FMN-binding, at 2,755,125 to 2,755,574
_02635
ECD_02636: ECD_02636 - tRNA(Ile1,Asp) pseudouridine(65) synthase, at 2,755,592 to 2,756,374
_02636
ECD_02637: ECD_02637 - DUF446 family protein, at 2,756,374 to 2,756,703
_02637
ECD_02638: ECD_02638 - SecY-interacting protein, at 2,757,325 to 2,757,870
_02638
Position (kb)
2755
2756
2757 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2754.593 kb on + strand at 2754.593 kb on + strand at 2754.594 kb on - strand at 2754.594 kb on - strand at 2754.594 kb on - strand at 2754.629 kb on - strand at 2754.679 kb on + strand at 2754.679 kb on + strand at 2754.679 kb on + strand at 2754.679 kb on + strand at 2754.679 kb on + strand at 2754.680 kb on - strand at 2754.680 kb on - strand at 2754.765 kb on + strand at 2754.766 kb on - strand at 2754.766 kb on - strand at 2754.786 kb on + strand at 2754.817 kb on + strand at 2754.818 kb on - strand at 2754.818 kb on - strand at 2754.818 kb on - strand at 2754.818 kb on - strand at 2754.819 kb on + strand at 2754.820 kb on - strand at 2754.820 kb on - strand at 2754.820 kb on - strand at 2754.829 kb on + strand at 2754.829 kb on + strand at 2754.829 kb on + strand at 2754.835 kb on + strand at 2754.836 kb on - strand at 2754.837 kb on + strand at 2754.837 kb on + strand at 2754.837 kb on + strand at 2754.838 kb on - strand at 2754.880 kb on + strand at 2754.881 kb on - strand at 2754.881 kb on - strand at 2755.043 kb on + strand at 2755.044 kb on - strand at 2755.108 kb on - strand at 2755.108 kb on - strand at 2755.123 kb on + strand at 2755.285 kb on + strand, within ECD_02635 at 2755.285 kb on + strand, within ECD_02635 at 2755.285 kb on + strand, within ECD_02635 at 2755.286 kb on - strand, within ECD_02635 at 2755.286 kb on - strand, within ECD_02635 at 2755.286 kb on - strand, within ECD_02635 at 2755.286 kb on - strand, within ECD_02635 at 2755.286 kb on - strand, within ECD_02635 at 2755.289 kb on + strand, within ECD_02635 at 2755.289 kb on + strand, within ECD_02635 at 2755.290 kb on - strand, within ECD_02635 at 2755.290 kb on - strand, within ECD_02635 at 2755.290 kb on - strand, within ECD_02635 at 2755.290 kb on - strand, within ECD_02635 at 2755.290 kb on - strand, within ECD_02635 at 2755.290 kb on - strand, within ECD_02635 at 2755.291 kb on - strand, within ECD_02635 at 2755.343 kb on + strand, within ECD_02635 at 2755.343 kb on + strand, within ECD_02635 at 2755.344 kb on - strand, within ECD_02635 at 2755.344 kb on - strand, within ECD_02635 at 2755.344 kb on - strand, within ECD_02635 at 2755.344 kb on - strand, within ECD_02635 at 2755.344 kb on - strand, within ECD_02635 at 2755.376 kb on + strand, within ECD_02635 at 2755.410 kb on - strand, within ECD_02635 at 2755.423 kb on + strand, within ECD_02635 at 2755.423 kb on + strand, within ECD_02635 at 2755.423 kb on + strand, within ECD_02635 at 2755.423 kb on + strand, within ECD_02635 at 2755.423 kb on + strand, within ECD_02635 at 2755.423 kb on + strand, within ECD_02635 at 2755.423 kb on + strand, within ECD_02635 at 2755.423 kb on + strand, within ECD_02635 at 2755.424 kb on - strand, within ECD_02635 at 2755.424 kb on - strand, within ECD_02635 at 2755.424 kb on - strand, within ECD_02635 at 2755.424 kb on - strand, within ECD_02635 at 2755.424 kb on - strand, within ECD_02635 at 2755.424 kb on - strand, within ECD_02635 at 2755.424 kb on - strand, within ECD_02635 at 2755.424 kb on - strand, within ECD_02635 at 2755.424 kb on - strand, within ECD_02635 at 2755.424 kb on - strand, within ECD_02635 at 2755.424 kb on - strand, within ECD_02635 at 2755.424 kb on - strand, within ECD_02635 at 2755.424 kb on - strand, within ECD_02635 at 2755.453 kb on - strand, within ECD_02635 at 2755.470 kb on + strand, within ECD_02635 at 2755.470 kb on + strand, within ECD_02635 at 2755.471 kb on - strand, within ECD_02635 at 2755.471 kb on - strand, within ECD_02635 at 2755.471 kb on - strand, within ECD_02635 at 2755.524 kb on + strand, within ECD_02635 at 2755.524 kb on + strand, within ECD_02635 at 2755.541 kb on - strand at 2755.594 kb on - strand at 2755.601 kb on + strand at 2755.601 kb on + strand at 2755.601 kb on + strand at 2755.601 kb on + strand at 2755.602 kb on - strand at 2755.602 kb on - strand at 2755.602 kb on - strand at 2755.602 kb on - strand at 2755.602 kb on - strand at 2755.602 kb on - strand at 2755.602 kb on - strand at 2755.602 kb on - strand at 2755.720 kb on + strand, within ECD_02636 at 2755.738 kb on + strand, within ECD_02636 at 2755.739 kb on - strand, within ECD_02636 at 2755.772 kb on + strand, within ECD_02636 at 2755.772 kb on + strand, within ECD_02636 at 2755.772 kb on + strand, within ECD_02636 at 2755.772 kb on + strand, within ECD_02636 at 2755.772 kb on + strand, within ECD_02636 at 2755.772 kb on + strand, within ECD_02636 at 2755.772 kb on + strand, within ECD_02636 at 2755.772 kb on + strand, within ECD_02636 at 2755.772 kb on + strand, within ECD_02636 at 2755.772 kb on + strand, within ECD_02636 at 2755.772 kb on + strand, within ECD_02636 at 2755.772 kb on + strand, within ECD_02636 at 2755.773 kb on - strand, within ECD_02636 at 2755.773 kb on - strand, within ECD_02636 at 2755.773 kb on - strand, within ECD_02636 at 2755.773 kb on - strand, within ECD_02636 at 2755.773 kb on - strand, within ECD_02636 at 2755.773 kb on - strand, within ECD_02636 at 2755.773 kb on - strand, within ECD_02636 at 2755.773 kb on - strand, within ECD_02636 at 2755.773 kb on - strand, within ECD_02636 at 2755.773 kb on - strand, within ECD_02636 at 2755.773 kb on - strand, within ECD_02636 at 2755.773 kb on - strand, within ECD_02636 at 2755.773 kb on - strand, within ECD_02636 at 2755.773 kb on - strand, within ECD_02636 at 2755.850 kb on - strand, within ECD_02636 at 2756.017 kb on + strand, within ECD_02636 at 2756.018 kb on - strand, within ECD_02636 at 2756.035 kb on + strand, within ECD_02636 at 2756.231 kb on - strand, within ECD_02636 at 2756.246 kb on + strand, within ECD_02636 at 2756.330 kb on - strand at 2756.330 kb on - strand at 2756.358 kb on + strand at 2756.359 kb on - strand at 2756.359 kb on - strand at 2756.359 kb on - strand at 2756.363 kb on + strand at 2756.363 kb on + strand at 2756.363 kb on + strand at 2756.364 kb on - strand at 2756.364 kb on - strand at 2756.364 kb on - strand at 2756.364 kb on - strand at 2756.364 kb on - strand at 2756.375 kb on + strand at 2756.375 kb on + strand at 2756.375 kb on + strand at 2756.375 kb on + strand at 2756.375 kb on + strand at 2756.427 kb on + strand, within ECD_02637 at 2756.427 kb on + strand, within ECD_02637 at 2756.427 kb on + strand, within ECD_02637 at 2756.468 kb on + strand, within ECD_02637 at 2756.468 kb on + strand, within ECD_02637 at 2756.469 kb on - strand, within ECD_02637 at 2756.471 kb on + strand, within ECD_02637 at 2756.472 kb on - strand, within ECD_02637 at 2756.472 kb on - strand, within ECD_02637 at 2756.472 kb on - strand, within ECD_02637 at 2756.472 kb on - strand, within ECD_02637 at 2756.472 kb on - strand, within ECD_02637 at 2756.511 kb on + strand, within ECD_02637 at 2756.515 kb on + strand, within ECD_02637 at 2756.596 kb on - strand, within ECD_02637 at 2756.596 kb on - strand, within ECD_02637 at 2756.598 kb on + strand, within ECD_02637 at 2756.599 kb on - strand, within ECD_02637 at 2756.599 kb on - strand, within ECD_02637 at 2756.601 kb on + strand, within ECD_02637 at 2756.601 kb on + strand, within ECD_02637 at 2756.601 kb on + strand, within ECD_02637 at 2756.602 kb on - strand, within ECD_02637 at 2756.602 kb on - strand, within ECD_02637 at 2756.602 kb on - strand, within ECD_02637 at 2756.703 kb on + strand at 2756.703 kb on + strand at 2756.704 kb on - strand at 2756.704 kb on - strand at 2756.704 kb on - strand at 2756.718 kb on - strand at 2756.740 kb on - strand at 2756.766 kb on + strand at 2756.767 kb on - strand at 2756.767 kb on - strand at 2756.806 kb on - strand at 2756.806 kb on - strand at 2756.876 kb on + strand at 2756.877 kb on - strand at 2756.877 kb on - strand at 2756.877 kb on - strand at 2756.877 kb on - strand at 2756.877 kb on - strand at 2756.877 kb on - strand at 2756.908 kb on + strand at 2756.908 kb on + strand at 2756.908 kb on + strand at 2756.908 kb on + strand at 2756.908 kb on + strand at 2756.909 kb on - strand at 2756.909 kb on - strand at 2756.909 kb on - strand at 2756.909 kb on - strand at 2756.909 kb on - strand at 2756.909 kb on - strand at 2757.120 kb on + strand at 2757.121 kb on - strand at 2757.121 kb on - strand at 2757.121 kb on - strand at 2757.121 kb on - strand at 2757.121 kb on - strand at 2757.145 kb on + strand at 2757.254 kb on - strand at 2757.318 kb on - strand at 2757.339 kb on + strand at 2757.339 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 2,754,593 + +0.2 2,754,593 + -0.1 2,754,594 - +0.1 2,754,594 - -0.3 2,754,594 - +0.4 2,754,629 - -0.2 2,754,679 + -0.3 2,754,679 + +2.2 2,754,679 + -0.2 2,754,679 + +2.0 2,754,679 + -1.0 2,754,680 - -0.6 2,754,680 - +0.4 2,754,765 + +0.5 2,754,766 - -1.1 2,754,766 - +0.4 2,754,786 + -0.5 2,754,817 + -2.8 2,754,818 - +0.7 2,754,818 - -1.2 2,754,818 - +0.4 2,754,818 - -0.3 2,754,819 + -0.2 2,754,820 - +0.4 2,754,820 - +2.3 2,754,820 - -0.2 2,754,829 + -0.2 2,754,829 + +0.2 2,754,829 + +0.1 2,754,835 + -0.2 2,754,836 - +1.0 2,754,837 + -0.1 2,754,837 + -0.1 2,754,837 + +0.4 2,754,838 - +0.5 2,754,880 + -0.4 2,754,881 - +0.2 2,754,881 - +0.1 2,755,043 + +0.6 2,755,044 - +1.0 2,755,108 - -1.7 2,755,108 - +0.1 2,755,123 + +0.8 2,755,285 + ECD_02635 0.36 +0.3 2,755,285 + ECD_02635 0.36 -1.2 2,755,285 + ECD_02635 0.36 +0.6 2,755,286 - ECD_02635 0.36 -0.5 2,755,286 - ECD_02635 0.36 -0.3 2,755,286 - ECD_02635 0.36 -1.2 2,755,286 - ECD_02635 0.36 -0.5 2,755,286 - ECD_02635 0.36 +0.1 2,755,289 + ECD_02635 0.36 +0.4 2,755,289 + ECD_02635 0.36 -0.8 2,755,290 - ECD_02635 0.37 -0.1 2,755,290 - ECD_02635 0.37 +0.3 2,755,290 - ECD_02635 0.37 +0.2 2,755,290 - ECD_02635 0.37 -0.0 2,755,290 - ECD_02635 0.37 +0.2 2,755,290 - ECD_02635 0.37 -0.1 2,755,291 - ECD_02635 0.37 +0.8 2,755,343 + ECD_02635 0.48 +1.2 2,755,343 + ECD_02635 0.48 +0.2 2,755,344 - ECD_02635 0.49 +0.8 2,755,344 - ECD_02635 0.49 +0.3 2,755,344 - ECD_02635 0.49 -0.1 2,755,344 - ECD_02635 0.49 -0.5 2,755,344 - ECD_02635 0.49 +0.4 2,755,376 + ECD_02635 0.56 -1.0 2,755,410 - ECD_02635 0.63 -0.4 2,755,423 + ECD_02635 0.66 -0.2 2,755,423 + ECD_02635 0.66 -0.9 2,755,423 + ECD_02635 0.66 +0.8 2,755,423 + ECD_02635 0.66 -0.3 2,755,423 + ECD_02635 0.66 +1.1 2,755,423 + ECD_02635 0.66 +0.2 2,755,423 + ECD_02635 0.66 -0.3 2,755,423 + ECD_02635 0.66 +0.7 2,755,424 - ECD_02635 0.66 -0.8 2,755,424 - ECD_02635 0.66 +0.9 2,755,424 - ECD_02635 0.66 -0.6 2,755,424 - ECD_02635 0.66 -0.3 2,755,424 - ECD_02635 0.66 +0.1 2,755,424 - ECD_02635 0.66 -0.8 2,755,424 - ECD_02635 0.66 +0.4 2,755,424 - ECD_02635 0.66 -0.0 2,755,424 - ECD_02635 0.66 +0.5 2,755,424 - ECD_02635 0.66 -0.3 2,755,424 - ECD_02635 0.66 -0.1 2,755,424 - ECD_02635 0.66 -1.8 2,755,424 - ECD_02635 0.66 -0.4 2,755,453 - ECD_02635 0.73 +0.6 2,755,470 + ECD_02635 0.77 +2.2 2,755,470 + ECD_02635 0.77 -0.3 2,755,471 - ECD_02635 0.77 +0.4 2,755,471 - ECD_02635 0.77 +0.5 2,755,471 - ECD_02635 0.77 -0.1 2,755,524 + ECD_02635 0.89 +0.2 2,755,524 + ECD_02635 0.89 +0.6 2,755,541 - +0.4 2,755,594 - -0.8 2,755,601 + +1.0 2,755,601 + +0.2 2,755,601 + -0.1 2,755,601 + -0.1 2,755,602 - -0.8 2,755,602 - +0.0 2,755,602 - +0.9 2,755,602 - +0.7 2,755,602 - +0.2 2,755,602 - +1.1 2,755,602 - +0.6 2,755,602 - +0.1 2,755,720 + ECD_02636 0.16 -0.4 2,755,738 + ECD_02636 0.19 +0.2 2,755,739 - ECD_02636 0.19 +0.4 2,755,772 + ECD_02636 0.23 -0.3 2,755,772 + ECD_02636 0.23 -0.8 2,755,772 + ECD_02636 0.23 +0.1 2,755,772 + ECD_02636 0.23 -0.9 2,755,772 + ECD_02636 0.23 +0.4 2,755,772 + ECD_02636 0.23 +0.1 2,755,772 + ECD_02636 0.23 +0.7 2,755,772 + ECD_02636 0.23 -0.1 2,755,772 + ECD_02636 0.23 -0.2 2,755,772 + ECD_02636 0.23 -0.2 2,755,772 + ECD_02636 0.23 +0.1 2,755,772 + ECD_02636 0.23 -0.3 2,755,773 - ECD_02636 0.23 -0.8 2,755,773 - ECD_02636 0.23 -0.6 2,755,773 - ECD_02636 0.23 +0.1 2,755,773 - ECD_02636 0.23 +0.7 2,755,773 - ECD_02636 0.23 +0.6 2,755,773 - ECD_02636 0.23 +0.2 2,755,773 - ECD_02636 0.23 +0.2 2,755,773 - ECD_02636 0.23 -0.7 2,755,773 - ECD_02636 0.23 +0.9 2,755,773 - ECD_02636 0.23 +0.5 2,755,773 - ECD_02636 0.23 -0.9 2,755,773 - ECD_02636 0.23 -0.3 2,755,773 - ECD_02636 0.23 -0.9 2,755,773 - ECD_02636 0.23 -0.1 2,755,850 - ECD_02636 0.33 +0.1 2,756,017 + ECD_02636 0.54 +0.2 2,756,018 - ECD_02636 0.54 -0.9 2,756,035 + ECD_02636 0.57 -2.6 2,756,231 - ECD_02636 0.82 -0.2 2,756,246 + ECD_02636 0.84 -1.0 2,756,330 - -0.9 2,756,330 - +0.1 2,756,358 + +0.6 2,756,359 - -0.5 2,756,359 - -0.1 2,756,359 - +0.9 2,756,363 + +0.7 2,756,363 + +0.5 2,756,363 + -0.3 2,756,364 - +1.7 2,756,364 - -1.0 2,756,364 - -0.1 2,756,364 - -1.8 2,756,364 - +0.4 2,756,375 + +0.3 2,756,375 + +0.2 2,756,375 + -0.4 2,756,375 + +0.6 2,756,375 + +1.1 2,756,427 + ECD_02637 0.16 +0.8 2,756,427 + ECD_02637 0.16 -0.7 2,756,427 + ECD_02637 0.16 -0.4 2,756,468 + ECD_02637 0.28 +0.2 2,756,468 + ECD_02637 0.28 -2.3 2,756,469 - ECD_02637 0.29 -0.3 2,756,471 + ECD_02637 0.29 -0.2 2,756,472 - ECD_02637 0.30 -0.7 2,756,472 - ECD_02637 0.30 +0.8 2,756,472 - ECD_02637 0.30 +1.0 2,756,472 - ECD_02637 0.30 -0.5 2,756,472 - ECD_02637 0.30 +0.2 2,756,511 + ECD_02637 0.42 -0.4 2,756,515 + ECD_02637 0.43 +0.2 2,756,596 - ECD_02637 0.67 -0.2 2,756,596 - ECD_02637 0.67 +2.0 2,756,598 + ECD_02637 0.68 +0.5 2,756,599 - ECD_02637 0.68 +0.8 2,756,599 - ECD_02637 0.68 -0.2 2,756,601 + ECD_02637 0.69 +0.2 2,756,601 + ECD_02637 0.69 +0.5 2,756,601 + ECD_02637 0.69 -0.7 2,756,602 - ECD_02637 0.69 -0.3 2,756,602 - ECD_02637 0.69 +0.4 2,756,602 - ECD_02637 0.69 -0.3 2,756,703 + -0.3 2,756,703 + +0.6 2,756,704 - +1.2 2,756,704 - -0.5 2,756,704 - +0.0 2,756,718 - +0.4 2,756,740 - +0.2 2,756,766 + +0.2 2,756,767 - +0.1 2,756,767 - -0.1 2,756,806 - +0.7 2,756,806 - -1.0 2,756,876 + +1.8 2,756,877 - -0.1 2,756,877 - +0.6 2,756,877 - +0.7 2,756,877 - -0.6 2,756,877 - -0.8 2,756,877 - +1.3 2,756,908 + +0.2 2,756,908 + +0.4 2,756,908 + +0.6 2,756,908 + -1.2 2,756,908 + -0.4 2,756,909 - +1.2 2,756,909 - -0.3 2,756,909 - +1.2 2,756,909 - +1.2 2,756,909 - -1.5 2,756,909 - -0.2 2,757,120 + +0.5 2,757,121 - -1.2 2,757,121 - +0.2 2,757,121 - +1.2 2,757,121 - +1.1 2,757,121 - +0.4 2,757,145 + +0.5 2,757,254 - -0.2 2,757,318 - +0.2 2,757,339 + +1.0 2,757,339 + +0.7
Or see this region's nucleotide sequence