Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02073 and ECD_02074 are separated by 2 nucleotides ECD_02074 and ECD_02075 are separated by 193 nucleotides ECD_02075 and ECD_02076 overlap by 7 nucleotides
ECD_02073: ECD_02073 - DUF218 superfamily vancomycin high temperature exclusion protein, at 2,127,782 to 2,128,501
_02073
ECD_02074: ECD_02074 - DUF2542 family protein, at 2,128,504 to 2,128,743
_02074
ECD_02075: ECD_02075 - dihydropyrimidine dehydrogenase, NADH-dependent, subunit N, at 2,128,937 to 2,130,175
_02075
ECD_02076: ECD_02076 - dihydropyrimidine dehydrogenase, NADH-dependent, subunit C, at 2,130,169 to 2,131,404
_02076
Position (kb)
2128
2129
2130
2131 Strain fitness (log2 ratio)
-1
0
1 at 2127.975 kb on - strand, within ECD_02073 at 2128.010 kb on + strand, within ECD_02073 at 2128.035 kb on + strand, within ECD_02073 at 2128.315 kb on - strand, within ECD_02073 at 2129.706 kb on + strand, within ECD_02075 at 2129.800 kb on - strand, within ECD_02075 at 2129.800 kb on - strand, within ECD_02075 at 2129.916 kb on + strand, within ECD_02075 at 2129.916 kb on + strand, within ECD_02075 at 2129.916 kb on + strand, within ECD_02075 at 2129.985 kb on + strand, within ECD_02075 at 2130.150 kb on - strand at 2130.643 kb on + strand, within ECD_02076 at 2130.801 kb on + strand, within ECD_02076
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 2,127,975 - ECD_02073 0.27 +0.4 2,128,010 + ECD_02073 0.32 -0.7 2,128,035 + ECD_02073 0.35 -1.5 2,128,315 - ECD_02073 0.74 -0.8 2,129,706 + ECD_02075 0.62 +1.7 2,129,800 - ECD_02075 0.70 -0.1 2,129,800 - ECD_02075 0.70 +1.4 2,129,916 + ECD_02075 0.79 +0.1 2,129,916 + ECD_02075 0.79 +1.6 2,129,916 + ECD_02075 0.79 +0.1 2,129,985 + ECD_02075 0.85 -0.7 2,130,150 - -0.1 2,130,643 + ECD_02076 0.38 +1.0 2,130,801 + ECD_02076 0.51 +0.0
Or see this region's nucleotide sequence