Strain Fitness in Escherichia coli BL21 around ECD_01214

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01213 and ECD_01214 are separated by 603 nucleotidesECD_01214 and ECD_01215 are separated by 301 nucleotides ECD_01213: ECD_01213 - global DNA-binding transcriptional dual regulator H-NS, at 1,280,301 to 1,280,714 _01213 ECD_01214: ECD_01214 - thymidine kinase/deoxyuridine kinase, at 1,281,318 to 1,281,935 _01214 ECD_01215: ECD_01215 - fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase, at 1,282,237 to 1,284,912 _01215 Position (kb) 1281 1282Strain fitness (log2 ratio) -1 0 1at 1280.420 kb on - strand, within ECD_01213at 1280.735 kb on - strandat 1282.045 kb on + strandat 1282.100 kb on + strandat 1282.329 kb on - strandat 1282.617 kb on - strand, within ECD_01215at 1282.662 kb on - strand, within ECD_01215at 1282.675 kb on - strand, within ECD_01215

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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1,280,420 - ECD_01213 0.29 +0.6
1,280,735 - +0.2
1,282,045 + +0.0
1,282,100 + +0.3
1,282,329 - -0.5
1,282,617 - ECD_01215 0.14 +0.7
1,282,662 - ECD_01215 0.16 -0.7
1,282,675 - ECD_01215 0.16 +0.2

Or see this region's nucleotide sequence