Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01173 and ECD_01174 are separated by 10 nucleotides ECD_01174 and ECD_01175 are separated by 10 nucleotides ECD_01175 and ECD_01176 are separated by 227 nucleotides
ECD_01173: ECD_01173 - putative dihydroxyacetone-specific PTS enzymes: HPr, EI components, at 1,235,844 to 1,237,262
_01173
ECD_01174: ECD_01174 - dihydroxyacetone kinase, C-terminal domain, at 1,237,273 to 1,237,905
_01174
ECD_01175: ECD_01175 - dihydroxyacetone kinase, PTS-dependent, dihydroxyacetone-binding subunit, at 1,237,916 to 1,238,986
_01175
ECD_01176: ECD_01176 - dhaKLM operon transcription activator, at 1,239,214 to 1,241,133
_01176
Position (kb)
1237
1238
1239 Strain fitness (log2 ratio)
-1
0
1 at 1237.236 kb on - strand at 1237.246 kb on - strand at 1237.309 kb on - strand at 1237.309 kb on - strand at 1237.396 kb on - strand, within ECD_01174 at 1237.402 kb on - strand, within ECD_01174 at 1237.402 kb on - strand, within ECD_01174 at 1237.783 kb on - strand, within ECD_01174 at 1238.015 kb on - strand at 1238.048 kb on - strand, within ECD_01175 at 1238.453 kb on - strand, within ECD_01175 at 1238.631 kb on - strand, within ECD_01175 at 1239.005 kb on - strand at 1239.285 kb on + strand at 1239.360 kb on + strand at 1239.414 kb on + strand, within ECD_01176 at 1239.414 kb on + strand, within ECD_01176 at 1239.503 kb on + strand, within ECD_01176 at 1239.532 kb on + strand, within ECD_01176 at 1239.555 kb on + strand, within ECD_01176 at 1239.579 kb on + strand, within ECD_01176
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 1,237,236 - +0.3 1,237,246 - -0.7 1,237,309 - +0.5 1,237,309 - +0.1 1,237,396 - ECD_01174 0.19 +0.9 1,237,402 - ECD_01174 0.20 -0.7 1,237,402 - ECD_01174 0.20 -0.5 1,237,783 - ECD_01174 0.81 +0.7 1,238,015 - -0.1 1,238,048 - ECD_01175 0.12 +0.2 1,238,453 - ECD_01175 0.50 -0.1 1,238,631 - ECD_01175 0.67 +1.3 1,239,005 - +0.2 1,239,285 + -1.4 1,239,360 + +0.2 1,239,414 + ECD_01176 0.10 +0.6 1,239,414 + ECD_01176 0.10 -0.3 1,239,503 + ECD_01176 0.15 -0.1 1,239,532 + ECD_01176 0.17 +0.0 1,239,555 + ECD_01176 0.18 +0.9 1,239,579 + ECD_01176 0.19 -0.2
Or see this region's nucleotide sequence