Strain Fitness in Escherichia coli BL21 around ECD_01175

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01173 and ECD_01174 are separated by 10 nucleotidesECD_01174 and ECD_01175 are separated by 10 nucleotidesECD_01175 and ECD_01176 are separated by 227 nucleotides ECD_01173: ECD_01173 - putative dihydroxyacetone-specific PTS enzymes: HPr, EI components, at 1,235,844 to 1,237,262 _01173 ECD_01174: ECD_01174 - dihydroxyacetone kinase, C-terminal domain, at 1,237,273 to 1,237,905 _01174 ECD_01175: ECD_01175 - dihydroxyacetone kinase, PTS-dependent, dihydroxyacetone-binding subunit, at 1,237,916 to 1,238,986 _01175 ECD_01176: ECD_01176 - dhaKLM operon transcription activator, at 1,239,214 to 1,241,133 _01176 Position (kb) 1237 1238 1239Strain fitness (log2 ratio) -1 0 1at 1237.236 kb on - strandat 1237.246 kb on - strandat 1237.309 kb on - strandat 1237.309 kb on - strandat 1237.396 kb on - strand, within ECD_01174at 1237.402 kb on - strand, within ECD_01174at 1237.402 kb on - strand, within ECD_01174at 1237.783 kb on - strand, within ECD_01174at 1238.015 kb on - strandat 1238.048 kb on - strand, within ECD_01175at 1238.453 kb on - strand, within ECD_01175at 1238.631 kb on - strand, within ECD_01175at 1239.005 kb on - strandat 1239.285 kb on + strandat 1239.360 kb on + strandat 1239.414 kb on + strand, within ECD_01176at 1239.414 kb on + strand, within ECD_01176at 1239.503 kb on + strand, within ECD_01176at 1239.532 kb on + strand, within ECD_01176at 1239.555 kb on + strand, within ECD_01176at 1239.579 kb on + strand, within ECD_01176

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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1,237,236 - +0.3
1,237,246 - -0.7
1,237,309 - +0.5
1,237,309 - +0.1
1,237,396 - ECD_01174 0.19 +0.9
1,237,402 - ECD_01174 0.20 -0.7
1,237,402 - ECD_01174 0.20 -0.5
1,237,783 - ECD_01174 0.81 +0.7
1,238,015 - -0.1
1,238,048 - ECD_01175 0.12 +0.2
1,238,453 - ECD_01175 0.50 -0.1
1,238,631 - ECD_01175 0.67 +1.3
1,239,005 - +0.2
1,239,285 + -1.4
1,239,360 + +0.2
1,239,414 + ECD_01176 0.10 +0.6
1,239,414 + ECD_01176 0.10 -0.3
1,239,503 + ECD_01176 0.15 -0.1
1,239,532 + ECD_01176 0.17 +0.0
1,239,555 + ECD_01176 0.18 +0.9
1,239,579 + ECD_01176 0.19 -0.2

Or see this region's nucleotide sequence