Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00767 and ECD_00768 are separated by 140 nucleotides ECD_00768 and ECD_00769 are separated by 228 nucleotides ECD_00769 and ECD_00770 are separated by 264 nucleotides
ECD_00767: ECD_00767 - putative family 3 glycosyltransferase, at 819,240 to 820,202
_00767
ECD_00768: ECD_00768 - putative dehydrogenase, at 820,343 to 821,428
_00768
ECD_00769: ECD_00769 - DUF1471 family putative periplasmic protein, at 821,657 to 821,917
_00769
ECD_00770: ECD_00770 - DksA-type zinc finger protein, at 822,182 to 822,448
_00770
Position (kb) 820
821
822 Strain fitness (log2 ratio) -1
0
1
2 at 819.501 kb on + strand, within ECD_00767 at 819.644 kb on + strand, within ECD_00767 at 819.644 kb on + strand, within ECD_00767 at 819.705 kb on - strand, within ECD_00767 at 819.785 kb on + strand, within ECD_00767 at 819.858 kb on + strand, within ECD_00767 at 819.910 kb on + strand, within ECD_00767 at 819.910 kb on + strand, within ECD_00767 at 819.911 kb on - strand, within ECD_00767 at 819.920 kb on + strand, within ECD_00767 at 819.999 kb on + strand, within ECD_00767 at 820.164 kb on - strand at 820.322 kb on + strand at 820.322 kb on + strand at 820.327 kb on + strand at 820.490 kb on - strand, within ECD_00768 at 820.508 kb on + strand, within ECD_00768 at 820.508 kb on + strand, within ECD_00768 at 820.508 kb on + strand, within ECD_00768 at 820.512 kb on + strand, within ECD_00768 at 820.512 kb on + strand, within ECD_00768 at 820.512 kb on + strand, within ECD_00768 at 820.513 kb on - strand, within ECD_00768 at 820.930 kb on + strand, within ECD_00768 at 821.044 kb on + strand, within ECD_00768 at 821.150 kb on - strand, within ECD_00768 at 821.203 kb on + strand, within ECD_00768 at 821.204 kb on - strand, within ECD_00768 at 821.471 kb on + strand at 821.472 kb on - strand at 821.544 kb on + strand at 821.544 kb on + strand at 821.545 kb on - strand at 821.664 kb on + strand at 821.718 kb on + strand, within ECD_00769
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 819,501 + ECD_00767 0.27 +0.3 819,644 + ECD_00767 0.42 -0.2 819,644 + ECD_00767 0.42 -1.4 819,705 - ECD_00767 0.48 -0.3 819,785 + ECD_00767 0.57 +0.1 819,858 + ECD_00767 0.64 +0.1 819,910 + ECD_00767 0.70 +0.2 819,910 + ECD_00767 0.70 +1.4 819,911 - ECD_00767 0.70 -1.5 819,920 + ECD_00767 0.71 -0.8 819,999 + ECD_00767 0.79 +0.3 820,164 - +1.7 820,322 + +0.2 820,322 + -1.2 820,327 + +0.7 820,490 - ECD_00768 0.14 +1.4 820,508 + ECD_00768 0.15 +0.9 820,508 + ECD_00768 0.15 +0.3 820,508 + ECD_00768 0.15 +0.6 820,512 + ECD_00768 0.16 +1.1 820,512 + ECD_00768 0.16 -0.9 820,512 + ECD_00768 0.16 +2.0 820,513 - ECD_00768 0.16 -1.2 820,930 + ECD_00768 0.54 -0.7 821,044 + ECD_00768 0.65 +0.3 821,150 - ECD_00768 0.74 +0.3 821,203 + ECD_00768 0.79 +1.1 821,204 - ECD_00768 0.79 +0.9 821,471 + +1.4 821,472 - -1.1 821,544 + +0.3 821,544 + +1.1 821,545 - -0.4 821,664 + +0.4 821,718 + ECD_00769 0.23 -0.5
Or see this region's nucleotide sequence