Strain Fitness in Escherichia coli BL21 around ECD_00740

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_10058 and ECD_00740 are separated by 855 nucleotidesECD_00740 and ECD_00741 are separated by 58 nucleotides ECD_10058: ECD_10058 - ea59, at 789,632 to 790,570 _10058 ECD_00740: ECD_00740 - kinase inhibitor-like protein, UPF0098 family, at 791,426 to 791,902 _00740 ECD_00741: ECD_00741 - 7,8-diaminopelargonic acid synthase, PLP-dependent, at 791,961 to 793,250 _00741 Position (kb) 791 792Strain fitness (log2 ratio) -3 -2 -1 0 1at 791.230 kb on - strandat 791.521 kb on + strand, within ECD_00740at 791.522 kb on - strand, within ECD_00740at 791.528 kb on + strand, within ECD_00740at 791.528 kb on + strand, within ECD_00740at 791.530 kb on + strand, within ECD_00740at 791.531 kb on - strand, within ECD_00740at 792.039 kb on - strandat 792.042 kb on - strandat 792.059 kb on - strandat 792.229 kb on - strand, within ECD_00741at 792.320 kb on + strand, within ECD_00741at 792.321 kb on - strand, within ECD_00741at 792.339 kb on - strand, within ECD_00741at 792.492 kb on - strand, within ECD_00741at 792.584 kb on - strand, within ECD_00741at 792.584 kb on - strand, within ECD_00741at 792.809 kb on + strand, within ECD_00741

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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791,230 - -1.3
791,521 + ECD_00740 0.20 -1.0
791,522 - ECD_00740 0.20 -1.1
791,528 + ECD_00740 0.21 +0.9
791,528 + ECD_00740 0.21 -1.1
791,530 + ECD_00740 0.22 -0.2
791,531 - ECD_00740 0.22 -0.0
792,039 - -0.5
792,042 - -0.4
792,059 - +1.5
792,229 - ECD_00741 0.21 -3.0
792,320 + ECD_00741 0.28 -0.2
792,321 - ECD_00741 0.28 +0.0
792,339 - ECD_00741 0.29 -0.7
792,492 - ECD_00741 0.41 +0.8
792,584 - ECD_00741 0.48 -0.5
792,584 - ECD_00741 0.48 -0.1
792,809 + ECD_00741 0.66 -0.1

Or see this region's nucleotide sequence