Strain Fitness in Escherichia coli BL21 around ECD_00447

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00445 and ECD_00446 overlap by 33 nucleotidesECD_00446 and ECD_00447 overlap by 4 nucleotidesECD_00447 and ECD_00448 are separated by 429 nucleotides ECD_00445: ECD_00445 - acyl-CoA thioesterase 1 and protease I and lysophospholipase L1, at 488,286 to 488,912 _00445 ECD_00446: ECD_00446 - putative ABC transporter ATPase, at 488,880 to 489,566 _00446 ECD_00447: ECD_00447 - putative ABC transporter permease, at 489,563 to 491,977 _00447 ECD_00448: ECD_00448 - Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor, at 492,407 to 496,687 _00448 Position (kb) 489 490 491 492Strain fitness (log2 ratio) -2 -1 0 1 2at 488.720 kb on + strand, within ECD_00445at 488.720 kb on + strand, within ECD_00445at 488.720 kb on + strand, within ECD_00445at 488.725 kb on - strand, within ECD_00445at 488.747 kb on + strand, within ECD_00445at 488.748 kb on - strand, within ECD_00445at 489.101 kb on - strand, within ECD_00446at 489.104 kb on + strand, within ECD_00446at 489.104 kb on + strand, within ECD_00446at 489.105 kb on - strand, within ECD_00446at 489.105 kb on - strand, within ECD_00446at 489.105 kb on - strand, within ECD_00446at 489.105 kb on - strand, within ECD_00446at 489.105 kb on - strand, within ECD_00446at 489.171 kb on - strand, within ECD_00446at 489.280 kb on + strand, within ECD_00446at 489.428 kb on + strand, within ECD_00446at 489.609 kb on + strandat 489.610 kb on - strandat 489.875 kb on - strand, within ECD_00447at 489.888 kb on - strand, within ECD_00447at 489.888 kb on - strand, within ECD_00447at 489.888 kb on - strand, within ECD_00447at 489.904 kb on + strand, within ECD_00447at 489.905 kb on - strand, within ECD_00447at 490.057 kb on + strand, within ECD_00447at 490.058 kb on - strand, within ECD_00447at 490.214 kb on - strand, within ECD_00447at 490.426 kb on + strand, within ECD_00447at 490.488 kb on + strand, within ECD_00447at 490.488 kb on + strand, within ECD_00447at 490.489 kb on - strand, within ECD_00447at 490.621 kb on - strand, within ECD_00447at 490.663 kb on - strand, within ECD_00447at 490.663 kb on - strand, within ECD_00447at 490.665 kb on + strand, within ECD_00447at 490.666 kb on - strand, within ECD_00447at 490.666 kb on - strand, within ECD_00447at 490.666 kb on - strand, within ECD_00447at 490.669 kb on + strand, within ECD_00447at 490.670 kb on - strand, within ECD_00447at 490.707 kb on - strand, within ECD_00447at 490.845 kb on + strand, within ECD_00447at 490.923 kb on + strand, within ECD_00447at 490.923 kb on + strand, within ECD_00447at 490.923 kb on + strand, within ECD_00447at 490.924 kb on - strand, within ECD_00447at 490.954 kb on + strand, within ECD_00447at 490.977 kb on + strand, within ECD_00447at 491.068 kb on - strand, within ECD_00447at 491.103 kb on + strand, within ECD_00447at 491.104 kb on - strand, within ECD_00447at 491.342 kb on - strand, within ECD_00447at 491.425 kb on + strand, within ECD_00447at 491.445 kb on + strand, within ECD_00447at 491.445 kb on + strand, within ECD_00447at 491.471 kb on - strand, within ECD_00447at 491.592 kb on + strand, within ECD_00447at 491.638 kb on + strand, within ECD_00447at 491.737 kb on + strandat 491.985 kb on - strandat 492.387 kb on + strandat 492.404 kb on + strandat 492.404 kb on + strandat 492.404 kb on + strandat 492.406 kb on + strandat 492.439 kb on + strandat 492.439 kb on + strandat 492.483 kb on + strandat 492.484 kb on - strandat 492.638 kb on + strandat 492.638 kb on + strandat 492.741 kb on + strandat 492.804 kb on - strandat 492.909 kb on + strand, within ECD_00448

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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488,720 + ECD_00445 0.69 -0.5
488,720 + ECD_00445 0.69 -0.1
488,720 + ECD_00445 0.69 +0.2
488,725 - ECD_00445 0.70 +0.9
488,747 + ECD_00445 0.74 +0.1
488,748 - ECD_00445 0.74 -0.2
489,101 - ECD_00446 0.32 -0.6
489,104 + ECD_00446 0.33 +0.2
489,104 + ECD_00446 0.33 -1.6
489,105 - ECD_00446 0.33 -0.8
489,105 - ECD_00446 0.33 +0.4
489,105 - ECD_00446 0.33 -0.2
489,105 - ECD_00446 0.33 -0.6
489,105 - ECD_00446 0.33 +0.2
489,171 - ECD_00446 0.42 -0.8
489,280 + ECD_00446 0.58 +0.2
489,428 + ECD_00446 0.80 +1.5
489,609 + +0.0
489,610 - +2.4
489,875 - ECD_00447 0.13 -0.2
489,888 - ECD_00447 0.13 +0.7
489,888 - ECD_00447 0.13 -1.2
489,888 - ECD_00447 0.13 +1.4
489,904 + ECD_00447 0.14 -1.6
489,905 - ECD_00447 0.14 +0.7
490,057 + ECD_00447 0.20 +1.4
490,058 - ECD_00447 0.20 -1.8
490,214 - ECD_00447 0.27 -0.7
490,426 + ECD_00447 0.36 -1.7
490,488 + ECD_00447 0.38 +0.7
490,488 + ECD_00447 0.38 -2.5
490,489 - ECD_00447 0.38 +0.0
490,621 - ECD_00447 0.44 +0.5
490,663 - ECD_00447 0.46 -0.0
490,663 - ECD_00447 0.46 -0.9
490,665 + ECD_00447 0.46 +1.5
490,666 - ECD_00447 0.46 -0.5
490,666 - ECD_00447 0.46 +0.9
490,666 - ECD_00447 0.46 -0.3
490,669 + ECD_00447 0.46 -0.4
490,670 - ECD_00447 0.46 +0.4
490,707 - ECD_00447 0.47 -0.2
490,845 + ECD_00447 0.53 -0.3
490,923 + ECD_00447 0.56 -0.1
490,923 + ECD_00447 0.56 -0.2
490,923 + ECD_00447 0.56 +0.9
490,924 - ECD_00447 0.56 -0.8
490,954 + ECD_00447 0.58 -0.5
490,977 + ECD_00447 0.59 -0.6
491,068 - ECD_00447 0.62 -0.5
491,103 + ECD_00447 0.64 -0.3
491,104 - ECD_00447 0.64 -0.0
491,342 - ECD_00447 0.74 -1.1
491,425 + ECD_00447 0.77 -0.7
491,445 + ECD_00447 0.78 -0.0
491,445 + ECD_00447 0.78 +0.1
491,471 - ECD_00447 0.79 +0.2
491,592 + ECD_00447 0.84 -0.7
491,638 + ECD_00447 0.86 +0.1
491,737 + +0.1
491,985 - +0.3
492,387 + -0.6
492,404 + +1.2
492,404 + +1.2
492,404 + -0.6
492,406 + +0.2
492,439 + -0.6
492,439 + +0.3
492,483 + +0.2
492,484 - +0.6
492,638 + -0.3
492,638 + -0.6
492,741 + +0.0
492,804 - +0.2
492,909 + ECD_00448 0.12 -0.9

Or see this region's nucleotide sequence