Strain Fitness in Escherichia coli BL21 around ECD_00278

Experiment: JK16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00277 and ECD_00278 are separated by 421 nucleotidesECD_00278 and ECD_00279 are separated by 9 nucleotides ECD_00277: ECD_00277 - DUF1116 family protein, at 307,953 to 309,371 _00277 ECD_00278: ECD_00278 - carbamate kinase-like protein, at 309,793 to 310,743 _00278 ECD_00279: ECD_00279 - putative metallo-dependent hydrolase domain deaminase, at 310,753 to 312,135 _00279 Position (kb) 309 310 311Strain fitness (log2 ratio) -2 -1 0 1 2at 308.796 kb on + strand, within ECD_00277at 308.797 kb on - strand, within ECD_00277at 308.862 kb on + strand, within ECD_00277at 308.985 kb on + strand, within ECD_00277at 308.987 kb on + strand, within ECD_00277at 308.987 kb on + strand, within ECD_00277at 308.987 kb on + strand, within ECD_00277at 308.987 kb on + strand, within ECD_00277at 308.988 kb on - strand, within ECD_00277at 309.374 kb on + strandat 309.374 kb on + strandat 309.374 kb on + strandat 309.374 kb on + strandat 309.374 kb on + strandat 309.374 kb on + strandat 309.447 kb on - strandat 309.695 kb on + strandat 309.786 kb on + strandat 309.844 kb on - strandat 310.044 kb on + strand, within ECD_00278at 310.087 kb on - strand, within ECD_00278at 310.309 kb on - strand, within ECD_00278at 310.358 kb on + strand, within ECD_00278at 310.518 kb on + strand, within ECD_00278at 310.519 kb on - strand, within ECD_00278at 310.582 kb on + strand, within ECD_00278at 310.583 kb on - strand, within ECD_00278at 310.584 kb on + strand, within ECD_00278at 310.728 kb on + strandat 310.750 kb on - strandat 310.828 kb on - strandat 310.828 kb on - strandat 310.913 kb on - strand, within ECD_00279at 310.915 kb on + strand, within ECD_00279at 310.915 kb on + strand, within ECD_00279at 310.915 kb on + strand, within ECD_00279at 310.916 kb on - strand, within ECD_00279at 310.916 kb on - strand, within ECD_00279at 311.068 kb on + strand, within ECD_00279at 311.115 kb on + strand, within ECD_00279at 311.115 kb on + strand, within ECD_00279at 311.115 kb on + strand, within ECD_00279at 311.116 kb on - strand, within ECD_00279at 311.233 kb on + strand, within ECD_00279at 311.234 kb on - strand, within ECD_00279at 311.267 kb on + strand, within ECD_00279at 311.267 kb on + strand, within ECD_00279at 311.268 kb on - strand, within ECD_00279at 311.473 kb on + strand, within ECD_00279at 311.617 kb on + strand, within ECD_00279at 311.617 kb on + strand, within ECD_00279at 311.618 kb on - strand, within ECD_00279at 311.618 kb on - strand, within ECD_00279at 311.618 kb on - strand, within ECD_00279at 311.618 kb on - strand, within ECD_00279at 311.618 kb on - strand, within ECD_00279at 311.711 kb on + strand, within ECD_00279

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Per-strain Table

Position Strand Gene LocusTag Fraction JK16
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308,796 + ECD_00277 0.59 -0.2
308,797 - ECD_00277 0.59 +0.2
308,862 + ECD_00277 0.64 +1.0
308,985 + ECD_00277 0.73 -0.3
308,987 + ECD_00277 0.73 +0.2
308,987 + ECD_00277 0.73 -1.2
308,987 + ECD_00277 0.73 +0.3
308,987 + ECD_00277 0.73 -0.0
308,988 - ECD_00277 0.73 -0.0
309,374 + +0.3
309,374 + -0.2
309,374 + +0.5
309,374 + -0.0
309,374 + +0.4
309,374 + +0.4
309,447 - +0.6
309,695 + -2.1
309,786 + -0.2
309,844 - +0.2
310,044 + ECD_00278 0.26 +0.1
310,087 - ECD_00278 0.31 +0.5
310,309 - ECD_00278 0.54 +0.1
310,358 + ECD_00278 0.59 -0.8
310,518 + ECD_00278 0.76 +0.5
310,519 - ECD_00278 0.76 -1.8
310,582 + ECD_00278 0.83 +2.1
310,583 - ECD_00278 0.83 +0.4
310,584 + ECD_00278 0.83 -0.4
310,728 + +1.5
310,750 - -0.5
310,828 - -1.9
310,828 - +0.0
310,913 - ECD_00279 0.12 -0.4
310,915 + ECD_00279 0.12 +0.1
310,915 + ECD_00279 0.12 +0.3
310,915 + ECD_00279 0.12 +0.3
310,916 - ECD_00279 0.12 +0.6
310,916 - ECD_00279 0.12 -1.2
311,068 + ECD_00279 0.23 +0.2
311,115 + ECD_00279 0.26 +1.4
311,115 + ECD_00279 0.26 -0.2
311,115 + ECD_00279 0.26 +0.4
311,116 - ECD_00279 0.26 +0.2
311,233 + ECD_00279 0.35 +0.4
311,234 - ECD_00279 0.35 -0.3
311,267 + ECD_00279 0.37 -1.4
311,267 + ECD_00279 0.37 -2.0
311,268 - ECD_00279 0.37 -0.5
311,473 + ECD_00279 0.52 -0.0
311,617 + ECD_00279 0.62 -0.7
311,617 + ECD_00279 0.62 +0.4
311,618 - ECD_00279 0.63 -0.6
311,618 - ECD_00279 0.63 -1.5
311,618 - ECD_00279 0.63 +0.0
311,618 - ECD_00279 0.63 -0.5
311,618 - ECD_00279 0.63 -0.4
311,711 + ECD_00279 0.69 -0.5

Or see this region's nucleotide sequence