Experiment: JK16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00062 and ECD_00063 are separated by 74 nucleotides ECD_00063 and ECD_00064 are separated by 284 nucleotides
ECD_00062: ECD_00062 - DNA polymerase II, at 66,234 to 68,585
_00062
ECD_00063: ECD_00063 - L-ribulose-5-phosphate 4-epimerase, at 68,660 to 69,355
_00063
ECD_00064: ECD_00064 - L-arabinose isomerase, at 69,640 to 71,142
_00064
Position (kb) 68
69
70 Strain fitness (log2 ratio) -2
-1
0
1
2 at 67.942 kb on + strand, within ECD_00062 at 67.942 kb on + strand, within ECD_00062 at 67.942 kb on + strand, within ECD_00062 at 67.975 kb on - strand, within ECD_00062 at 67.996 kb on + strand, within ECD_00062 at 67.996 kb on + strand, within ECD_00062 at 67.997 kb on - strand, within ECD_00062 at 68.048 kb on + strand, within ECD_00062 at 68.048 kb on + strand, within ECD_00062 at 68.049 kb on - strand, within ECD_00062 at 68.049 kb on - strand, within ECD_00062 at 68.050 kb on + strand, within ECD_00062 at 68.050 kb on + strand, within ECD_00062 at 68.050 kb on + strand, within ECD_00062 at 68.124 kb on - strand, within ECD_00062 at 68.198 kb on + strand, within ECD_00062 at 68.245 kb on + strand, within ECD_00062 at 68.276 kb on - strand, within ECD_00062 at 68.312 kb on - strand, within ECD_00062 at 68.420 kb on + strand at 68.591 kb on - strand at 68.617 kb on + strand at 68.673 kb on + strand at 68.692 kb on + strand at 68.700 kb on + strand at 68.700 kb on + strand at 68.701 kb on - strand at 68.770 kb on + strand, within ECD_00063 at 68.771 kb on - strand, within ECD_00063 at 68.772 kb on + strand, within ECD_00063 at 68.772 kb on + strand, within ECD_00063 at 68.772 kb on + strand, within ECD_00063 at 68.772 kb on + strand, within ECD_00063 at 68.772 kb on + strand, within ECD_00063 at 68.772 kb on + strand, within ECD_00063 at 68.773 kb on - strand, within ECD_00063 at 68.934 kb on + strand, within ECD_00063 at 69.049 kb on + strand, within ECD_00063 at 69.213 kb on + strand, within ECD_00063 at 69.298 kb on + strand at 69.326 kb on + strand at 69.326 kb on + strand at 69.422 kb on + strand at 69.508 kb on - strand at 69.592 kb on + strand at 69.637 kb on + strand at 69.638 kb on - strand at 69.922 kb on - strand, within ECD_00064 at 70.017 kb on + strand, within ECD_00064 at 70.117 kb on - strand, within ECD_00064 at 70.117 kb on - strand, within ECD_00064 at 70.133 kb on + strand, within ECD_00064 at 70.133 kb on + strand, within ECD_00064 at 70.133 kb on + strand, within ECD_00064 at 70.133 kb on + strand, within ECD_00064 at 70.133 kb on + strand, within ECD_00064 at 70.134 kb on - strand, within ECD_00064 at 70.139 kb on + strand, within ECD_00064 at 70.139 kb on + strand, within ECD_00064 at 70.140 kb on - strand, within ECD_00064 at 70.140 kb on - strand, within ECD_00064 at 70.140 kb on - strand, within ECD_00064 at 70.149 kb on + strand, within ECD_00064 at 70.265 kb on - strand, within ECD_00064
Per-strain Table
Position Strand Gene LocusTag Fraction JK16 remove 67,942 + ECD_00062 0.73 +1.9 67,942 + ECD_00062 0.73 -0.2 67,942 + ECD_00062 0.73 -0.1 67,975 - ECD_00062 0.74 -0.4 67,996 + ECD_00062 0.75 -1.0 67,996 + ECD_00062 0.75 +0.5 67,997 - ECD_00062 0.75 -0.8 68,048 + ECD_00062 0.77 +0.4 68,048 + ECD_00062 0.77 +1.0 68,049 - ECD_00062 0.77 +1.5 68,049 - ECD_00062 0.77 +1.3 68,050 + ECD_00062 0.77 +0.6 68,050 + ECD_00062 0.77 -0.8 68,050 + ECD_00062 0.77 -2.3 68,124 - ECD_00062 0.80 -0.2 68,198 + ECD_00062 0.84 -0.6 68,245 + ECD_00062 0.86 -0.1 68,276 - ECD_00062 0.87 +0.5 68,312 - ECD_00062 0.88 +0.3 68,420 + -0.3 68,591 - -1.1 68,617 + +0.4 68,673 + -0.2 68,692 + +0.3 68,700 + +0.1 68,700 + -0.7 68,701 - -1.7 68,770 + ECD_00063 0.16 +0.6 68,771 - ECD_00063 0.16 +1.0 68,772 + ECD_00063 0.16 -0.3 68,772 + ECD_00063 0.16 -0.1 68,772 + ECD_00063 0.16 +0.9 68,772 + ECD_00063 0.16 -0.2 68,772 + ECD_00063 0.16 +0.6 68,772 + ECD_00063 0.16 +0.2 68,773 - ECD_00063 0.16 +0.9 68,934 + ECD_00063 0.39 +0.7 69,049 + ECD_00063 0.56 -0.4 69,213 + ECD_00063 0.79 -0.2 69,298 + +0.1 69,326 + -0.1 69,326 + -0.7 69,422 + +0.2 69,508 - +0.7 69,592 + -0.1 69,637 + +0.3 69,638 - -0.6 69,922 - ECD_00064 0.19 -0.1 70,017 + ECD_00064 0.25 +0.8 70,117 - ECD_00064 0.32 +0.6 70,117 - ECD_00064 0.32 -0.1 70,133 + ECD_00064 0.33 +0.3 70,133 + ECD_00064 0.33 -0.2 70,133 + ECD_00064 0.33 -0.5 70,133 + ECD_00064 0.33 +0.4 70,133 + ECD_00064 0.33 -0.1 70,134 - ECD_00064 0.33 +0.4 70,139 + ECD_00064 0.33 -0.1 70,139 + ECD_00064 0.33 -0.2 70,140 - ECD_00064 0.33 +0.3 70,140 - ECD_00064 0.33 -0.3 70,140 - ECD_00064 0.33 +0.0 70,149 + ECD_00064 0.34 +0.4 70,265 - ECD_00064 0.42 -0.2
Or see this region's nucleotide sequence