Strain Fitness in Escherichia coli BL21 around ECD_03921

Experiment: K25

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03920 and ECD_03921 are separated by 362 nucleotidesECD_03921 and ECD_03922 are separated by 133 nucleotidesECD_03922 and ECD_03923 are separated by 165 nucleotides ECD_03920: ECD_03920 - uncharacterized protein, at 4,167,969 to 4,168,715 _03920 ECD_03921: ECD_03921 - tRNA-dihydrouridine synthase A, at 4,169,078 to 4,170,115 _03921 ECD_03922: ECD_03922 - phage shock protein G, at 4,170,249 to 4,170,491 _03922 ECD_03923: ECD_03923 - quinone oxidoreductase, NADPH-dependent, at 4,170,657 to 4,171,640 _03923 Position (kb) 4169 4170 4171Strain fitness (log2 ratio) -1 0 1 2at 4168.130 kb on + strand, within ECD_03920at 4168.420 kb on - strand, within ECD_03920at 4168.845 kb on + strandat 4168.989 kb on + strandat 4168.989 kb on + strandat 4168.989 kb on + strandat 4168.991 kb on + strandat 4168.991 kb on + strandat 4169.230 kb on + strand, within ECD_03921at 4169.231 kb on - strand, within ECD_03921at 4169.240 kb on + strand, within ECD_03921at 4169.240 kb on + strand, within ECD_03921at 4169.241 kb on - strand, within ECD_03921at 4169.241 kb on - strand, within ECD_03921at 4169.241 kb on - strand, within ECD_03921at 4169.241 kb on - strand, within ECD_03921at 4169.243 kb on - strand, within ECD_03921at 4169.297 kb on + strand, within ECD_03921at 4169.297 kb on + strand, within ECD_03921at 4169.298 kb on - strand, within ECD_03921at 4169.568 kb on - strand, within ECD_03921at 4169.642 kb on - strand, within ECD_03921at 4169.642 kb on - strand, within ECD_03921at 4169.642 kb on - strand, within ECD_03921at 4169.711 kb on + strand, within ECD_03921at 4169.711 kb on + strand, within ECD_03921at 4169.800 kb on + strand, within ECD_03921at 4169.832 kb on - strand, within ECD_03921at 4169.925 kb on - strand, within ECD_03921at 4169.930 kb on + strand, within ECD_03921at 4169.930 kb on + strand, within ECD_03921at 4169.931 kb on - strand, within ECD_03921at 4169.931 kb on - strand, within ECD_03921at 4169.960 kb on + strand, within ECD_03921at 4169.960 kb on + strand, within ECD_03921at 4169.971 kb on + strand, within ECD_03921at 4169.972 kb on - strand, within ECD_03921at 4169.972 kb on - strand, within ECD_03921at 4169.972 kb on - strand, within ECD_03921at 4169.984 kb on - strand, within ECD_03921at 4169.984 kb on - strand, within ECD_03921at 4169.984 kb on - strand, within ECD_03921at 4170.005 kb on - strand, within ECD_03921at 4170.033 kb on - strandat 4170.070 kb on + strandat 4170.071 kb on - strandat 4170.259 kb on + strandat 4170.350 kb on + strand, within ECD_03922at 4170.350 kb on + strand, within ECD_03922at 4170.351 kb on - strand, within ECD_03922at 4170.351 kb on - strand, within ECD_03922at 4170.351 kb on - strand, within ECD_03922at 4170.384 kb on - strand, within ECD_03922at 4170.404 kb on - strand, within ECD_03922at 4170.429 kb on - strand, within ECD_03922at 4170.429 kb on - strand, within ECD_03922at 4170.517 kb on - strandat 4170.530 kb on + strandat 4170.531 kb on - strandat 4170.541 kb on - strandat 4170.601 kb on + strandat 4170.602 kb on - strandat 4170.606 kb on - strandat 4170.606 kb on - strandat 4170.616 kb on + strandat 4170.764 kb on + strand, within ECD_03923at 4170.764 kb on + strand, within ECD_03923at 4170.835 kb on + strand, within ECD_03923at 4170.836 kb on - strand, within ECD_03923at 4170.836 kb on - strand, within ECD_03923at 4170.836 kb on - strand, within ECD_03923at 4170.837 kb on - strand, within ECD_03923at 4170.862 kb on + strand, within ECD_03923at 4170.862 kb on + strand, within ECD_03923at 4170.862 kb on + strand, within ECD_03923at 4170.863 kb on - strand, within ECD_03923at 4170.939 kb on + strand, within ECD_03923at 4171.070 kb on + strand, within ECD_03923at 4171.070 kb on + strand, within ECD_03923at 4171.071 kb on - strand, within ECD_03923

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K25
remove
4,168,130 + ECD_03920 0.22 +0.3
4,168,420 - ECD_03920 0.60 +0.2
4,168,845 + +0.5
4,168,989 + -0.1
4,168,989 + -0.1
4,168,989 + -0.4
4,168,991 + +0.5
4,168,991 + -0.3
4,169,230 + ECD_03921 0.15 +0.3
4,169,231 - ECD_03921 0.15 -0.2
4,169,240 + ECD_03921 0.16 +0.4
4,169,240 + ECD_03921 0.16 -1.0
4,169,241 - ECD_03921 0.16 -0.7
4,169,241 - ECD_03921 0.16 -1.0
4,169,241 - ECD_03921 0.16 -0.7
4,169,241 - ECD_03921 0.16 +0.2
4,169,243 - ECD_03921 0.16 -0.2
4,169,297 + ECD_03921 0.21 +2.0
4,169,297 + ECD_03921 0.21 +0.3
4,169,298 - ECD_03921 0.21 -0.8
4,169,568 - ECD_03921 0.47 -1.4
4,169,642 - ECD_03921 0.54 -0.2
4,169,642 - ECD_03921 0.54 -0.1
4,169,642 - ECD_03921 0.54 +1.2
4,169,711 + ECD_03921 0.61 +0.1
4,169,711 + ECD_03921 0.61 -1.0
4,169,800 + ECD_03921 0.70 -0.3
4,169,832 - ECD_03921 0.73 -0.4
4,169,925 - ECD_03921 0.82 +2.2
4,169,930 + ECD_03921 0.82 +0.4
4,169,930 + ECD_03921 0.82 -0.2
4,169,931 - ECD_03921 0.82 +0.5
4,169,931 - ECD_03921 0.82 +0.2
4,169,960 + ECD_03921 0.85 -0.6
4,169,960 + ECD_03921 0.85 -0.2
4,169,971 + ECD_03921 0.86 -0.7
4,169,972 - ECD_03921 0.86 -0.7
4,169,972 - ECD_03921 0.86 -0.6
4,169,972 - ECD_03921 0.86 +0.8
4,169,984 - ECD_03921 0.87 +0.3
4,169,984 - ECD_03921 0.87 +0.5
4,169,984 - ECD_03921 0.87 -0.2
4,170,005 - ECD_03921 0.89 +0.4
4,170,033 - -0.8
4,170,070 + +0.8
4,170,071 - +0.7
4,170,259 + +0.4
4,170,350 + ECD_03922 0.42 +0.2
4,170,350 + ECD_03922 0.42 +0.8
4,170,351 - ECD_03922 0.42 -0.1
4,170,351 - ECD_03922 0.42 +0.3
4,170,351 - ECD_03922 0.42 -0.8
4,170,384 - ECD_03922 0.56 +0.8
4,170,404 - ECD_03922 0.64 +0.3
4,170,429 - ECD_03922 0.74 -0.5
4,170,429 - ECD_03922 0.74 -0.4
4,170,517 - -0.5
4,170,530 + -0.1
4,170,531 - -0.2
4,170,541 - -0.1
4,170,601 + -1.4
4,170,602 - +1.3
4,170,606 - -0.3
4,170,606 - -0.2
4,170,616 + -0.1
4,170,764 + ECD_03923 0.11 -0.4
4,170,764 + ECD_03923 0.11 -1.0
4,170,835 + ECD_03923 0.18 -0.8
4,170,836 - ECD_03923 0.18 -0.6
4,170,836 - ECD_03923 0.18 -0.4
4,170,836 - ECD_03923 0.18 -0.2
4,170,837 - ECD_03923 0.18 +0.2
4,170,862 + ECD_03923 0.21 -0.7
4,170,862 + ECD_03923 0.21 -0.2
4,170,862 + ECD_03923 0.21 -1.2
4,170,863 - ECD_03923 0.21 +0.5
4,170,939 + ECD_03923 0.29 -0.2
4,171,070 + ECD_03923 0.42 +0.2
4,171,070 + ECD_03923 0.42 +0.1
4,171,071 - ECD_03923 0.42 +0.3

Or see this region's nucleotide sequence