Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03920 and ECD_03921 are separated by 362 nucleotides ECD_03921 and ECD_03922 are separated by 133 nucleotides ECD_03922 and ECD_03923 are separated by 165 nucleotides
ECD_03920: ECD_03920 - uncharacterized protein, at 4,167,969 to 4,168,715
_03920
ECD_03921: ECD_03921 - tRNA-dihydrouridine synthase A, at 4,169,078 to 4,170,115
_03921
ECD_03922: ECD_03922 - phage shock protein G, at 4,170,249 to 4,170,491
_03922
ECD_03923: ECD_03923 - quinone oxidoreductase, NADPH-dependent, at 4,170,657 to 4,171,640
_03923
Position (kb)
4169
4170
4171 Strain fitness (log2 ratio)
-1
0
1
2 at 4168.130 kb on + strand, within ECD_03920 at 4168.420 kb on - strand, within ECD_03920 at 4168.845 kb on + strand at 4168.989 kb on + strand at 4168.989 kb on + strand at 4168.989 kb on + strand at 4168.991 kb on + strand at 4168.991 kb on + strand at 4169.230 kb on + strand, within ECD_03921 at 4169.231 kb on - strand, within ECD_03921 at 4169.240 kb on + strand, within ECD_03921 at 4169.240 kb on + strand, within ECD_03921 at 4169.241 kb on - strand, within ECD_03921 at 4169.241 kb on - strand, within ECD_03921 at 4169.241 kb on - strand, within ECD_03921 at 4169.241 kb on - strand, within ECD_03921 at 4169.243 kb on - strand, within ECD_03921 at 4169.297 kb on + strand, within ECD_03921 at 4169.297 kb on + strand, within ECD_03921 at 4169.298 kb on - strand, within ECD_03921 at 4169.568 kb on - strand, within ECD_03921 at 4169.642 kb on - strand, within ECD_03921 at 4169.642 kb on - strand, within ECD_03921 at 4169.642 kb on - strand, within ECD_03921 at 4169.711 kb on + strand, within ECD_03921 at 4169.711 kb on + strand, within ECD_03921 at 4169.800 kb on + strand, within ECD_03921 at 4169.832 kb on - strand, within ECD_03921 at 4169.925 kb on - strand, within ECD_03921 at 4169.930 kb on + strand, within ECD_03921 at 4169.930 kb on + strand, within ECD_03921 at 4169.931 kb on - strand, within ECD_03921 at 4169.931 kb on - strand, within ECD_03921 at 4169.960 kb on + strand, within ECD_03921 at 4169.960 kb on + strand, within ECD_03921 at 4169.971 kb on + strand, within ECD_03921 at 4169.972 kb on - strand, within ECD_03921 at 4169.972 kb on - strand, within ECD_03921 at 4169.972 kb on - strand, within ECD_03921 at 4169.984 kb on - strand, within ECD_03921 at 4169.984 kb on - strand, within ECD_03921 at 4169.984 kb on - strand, within ECD_03921 at 4170.005 kb on - strand, within ECD_03921 at 4170.033 kb on - strand at 4170.070 kb on + strand at 4170.071 kb on - strand at 4170.259 kb on + strand at 4170.350 kb on + strand, within ECD_03922 at 4170.350 kb on + strand, within ECD_03922 at 4170.351 kb on - strand, within ECD_03922 at 4170.351 kb on - strand, within ECD_03922 at 4170.351 kb on - strand, within ECD_03922 at 4170.384 kb on - strand, within ECD_03922 at 4170.404 kb on - strand, within ECD_03922 at 4170.429 kb on - strand, within ECD_03922 at 4170.429 kb on - strand, within ECD_03922 at 4170.517 kb on - strand at 4170.530 kb on + strand at 4170.531 kb on - strand at 4170.541 kb on - strand at 4170.601 kb on + strand at 4170.602 kb on - strand at 4170.606 kb on - strand at 4170.606 kb on - strand at 4170.616 kb on + strand at 4170.764 kb on + strand, within ECD_03923 at 4170.764 kb on + strand, within ECD_03923 at 4170.835 kb on + strand, within ECD_03923 at 4170.836 kb on - strand, within ECD_03923 at 4170.836 kb on - strand, within ECD_03923 at 4170.836 kb on - strand, within ECD_03923 at 4170.837 kb on - strand, within ECD_03923 at 4170.862 kb on + strand, within ECD_03923 at 4170.862 kb on + strand, within ECD_03923 at 4170.862 kb on + strand, within ECD_03923 at 4170.863 kb on - strand, within ECD_03923 at 4170.939 kb on + strand, within ECD_03923 at 4171.070 kb on + strand, within ECD_03923 at 4171.070 kb on + strand, within ECD_03923 at 4171.071 kb on - strand, within ECD_03923
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 4,168,130 + ECD_03920 0.22 +0.3 4,168,420 - ECD_03920 0.60 +0.2 4,168,845 + +0.5 4,168,989 + -0.1 4,168,989 + -0.1 4,168,989 + -0.4 4,168,991 + +0.5 4,168,991 + -0.3 4,169,230 + ECD_03921 0.15 +0.3 4,169,231 - ECD_03921 0.15 -0.2 4,169,240 + ECD_03921 0.16 +0.4 4,169,240 + ECD_03921 0.16 -1.0 4,169,241 - ECD_03921 0.16 -0.7 4,169,241 - ECD_03921 0.16 -1.0 4,169,241 - ECD_03921 0.16 -0.7 4,169,241 - ECD_03921 0.16 +0.2 4,169,243 - ECD_03921 0.16 -0.2 4,169,297 + ECD_03921 0.21 +2.0 4,169,297 + ECD_03921 0.21 +0.3 4,169,298 - ECD_03921 0.21 -0.8 4,169,568 - ECD_03921 0.47 -1.4 4,169,642 - ECD_03921 0.54 -0.2 4,169,642 - ECD_03921 0.54 -0.1 4,169,642 - ECD_03921 0.54 +1.2 4,169,711 + ECD_03921 0.61 +0.1 4,169,711 + ECD_03921 0.61 -1.0 4,169,800 + ECD_03921 0.70 -0.3 4,169,832 - ECD_03921 0.73 -0.4 4,169,925 - ECD_03921 0.82 +2.2 4,169,930 + ECD_03921 0.82 +0.4 4,169,930 + ECD_03921 0.82 -0.2 4,169,931 - ECD_03921 0.82 +0.5 4,169,931 - ECD_03921 0.82 +0.2 4,169,960 + ECD_03921 0.85 -0.6 4,169,960 + ECD_03921 0.85 -0.2 4,169,971 + ECD_03921 0.86 -0.7 4,169,972 - ECD_03921 0.86 -0.7 4,169,972 - ECD_03921 0.86 -0.6 4,169,972 - ECD_03921 0.86 +0.8 4,169,984 - ECD_03921 0.87 +0.3 4,169,984 - ECD_03921 0.87 +0.5 4,169,984 - ECD_03921 0.87 -0.2 4,170,005 - ECD_03921 0.89 +0.4 4,170,033 - -0.8 4,170,070 + +0.8 4,170,071 - +0.7 4,170,259 + +0.4 4,170,350 + ECD_03922 0.42 +0.2 4,170,350 + ECD_03922 0.42 +0.8 4,170,351 - ECD_03922 0.42 -0.1 4,170,351 - ECD_03922 0.42 +0.3 4,170,351 - ECD_03922 0.42 -0.8 4,170,384 - ECD_03922 0.56 +0.8 4,170,404 - ECD_03922 0.64 +0.3 4,170,429 - ECD_03922 0.74 -0.5 4,170,429 - ECD_03922 0.74 -0.4 4,170,517 - -0.5 4,170,530 + -0.1 4,170,531 - -0.2 4,170,541 - -0.1 4,170,601 + -1.4 4,170,602 - +1.3 4,170,606 - -0.3 4,170,606 - -0.2 4,170,616 + -0.1 4,170,764 + ECD_03923 0.11 -0.4 4,170,764 + ECD_03923 0.11 -1.0 4,170,835 + ECD_03923 0.18 -0.8 4,170,836 - ECD_03923 0.18 -0.6 4,170,836 - ECD_03923 0.18 -0.4 4,170,836 - ECD_03923 0.18 -0.2 4,170,837 - ECD_03923 0.18 +0.2 4,170,862 + ECD_03923 0.21 -0.7 4,170,862 + ECD_03923 0.21 -0.2 4,170,862 + ECD_03923 0.21 -1.2 4,170,863 - ECD_03923 0.21 +0.5 4,170,939 + ECD_03923 0.29 -0.2 4,171,070 + ECD_03923 0.42 +0.2 4,171,070 + ECD_03923 0.42 +0.1 4,171,071 - ECD_03923 0.42 +0.3
Or see this region's nucleotide sequence