Strain Fitness in Escherichia coli BL21 around ECD_03431

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03430 and ECD_03431 are separated by 12 nucleotidesECD_03431 and ECD_03432 are separated by 3 nucleotides ECD_03430: ECD_03430 - 2,3-diketo-L-gulonate TRAP transporter large permease protein, at 3,606,956 to 3,608,233 _03430 ECD_03431: ECD_03431 - 2,3-diketo-L-gulonate-binding periplasmic protein, at 3,608,246 to 3,609,232 _03431 ECD_03432: ECD_03432 - L-xylulose kinase, at 3,609,236 to 3,610,732 _03432 Position (kb) 3608 3609 3610Strain fitness (log2 ratio) -2 -1 0 1at 3607.258 kb on + strand, within ECD_03430at 3607.258 kb on + strand, within ECD_03430at 3607.259 kb on - strand, within ECD_03430at 3607.259 kb on - strand, within ECD_03430at 3607.259 kb on - strand, within ECD_03430at 3607.347 kb on - strand, within ECD_03430at 3607.402 kb on + strand, within ECD_03430at 3607.423 kb on + strand, within ECD_03430at 3607.427 kb on - strand, within ECD_03430at 3607.459 kb on + strand, within ECD_03430at 3607.459 kb on + strand, within ECD_03430at 3607.460 kb on - strand, within ECD_03430at 3607.516 kb on + strand, within ECD_03430at 3607.516 kb on + strand, within ECD_03430at 3607.517 kb on - strand, within ECD_03430at 3607.549 kb on - strand, within ECD_03430at 3607.694 kb on + strand, within ECD_03430at 3607.717 kb on + strand, within ECD_03430at 3607.718 kb on - strand, within ECD_03430at 3607.718 kb on - strand, within ECD_03430at 3607.718 kb on - strand, within ECD_03430at 3607.755 kb on + strand, within ECD_03430at 3607.755 kb on + strand, within ECD_03430at 3607.756 kb on - strand, within ECD_03430at 3607.756 kb on - strand, within ECD_03430at 3607.912 kb on + strand, within ECD_03430at 3607.913 kb on - strand, within ECD_03430at 3607.913 kb on - strand, within ECD_03430at 3607.966 kb on - strand, within ECD_03430at 3607.966 kb on - strand, within ECD_03430at 3608.065 kb on + strand, within ECD_03430at 3608.481 kb on + strand, within ECD_03431at 3608.481 kb on + strand, within ECD_03431at 3608.482 kb on - strand, within ECD_03431at 3608.661 kb on + strand, within ECD_03431at 3608.717 kb on - strand, within ECD_03431at 3608.831 kb on + strand, within ECD_03431at 3608.831 kb on + strand, within ECD_03431at 3608.832 kb on - strand, within ECD_03431at 3608.942 kb on + strand, within ECD_03431at 3608.988 kb on + strand, within ECD_03431at 3608.989 kb on - strand, within ECD_03431at 3608.989 kb on - strand, within ECD_03431at 3608.989 kb on - strand, within ECD_03431at 3608.989 kb on - strand, within ECD_03431at 3609.037 kb on + strand, within ECD_03431at 3609.041 kb on + strand, within ECD_03431at 3609.041 kb on + strand, within ECD_03431at 3609.041 kb on + strand, within ECD_03431at 3609.041 kb on + strand, within ECD_03431at 3609.042 kb on - strand, within ECD_03431at 3609.230 kb on + strandat 3609.259 kb on - strandat 3609.424 kb on + strand, within ECD_03432at 3609.425 kb on - strand, within ECD_03432at 3609.652 kb on - strand, within ECD_03432at 3609.652 kb on - strand, within ECD_03432at 3609.735 kb on + strand, within ECD_03432at 3609.766 kb on + strand, within ECD_03432at 3609.766 kb on + strand, within ECD_03432at 3609.767 kb on - strand, within ECD_03432at 3609.806 kb on + strand, within ECD_03432at 3609.807 kb on - strand, within ECD_03432at 3610.006 kb on + strand, within ECD_03432at 3610.063 kb on - strand, within ECD_03432at 3610.063 kb on - strand, within ECD_03432at 3610.085 kb on + strand, within ECD_03432at 3610.085 kb on + strand, within ECD_03432at 3610.086 kb on - strand, within ECD_03432at 3610.086 kb on - strand, within ECD_03432at 3610.086 kb on - strand, within ECD_03432at 3610.086 kb on - strand, within ECD_03432at 3610.086 kb on - strand, within ECD_03432at 3610.092 kb on - strand, within ECD_03432at 3610.092 kb on - strand, within ECD_03432at 3610.092 kb on - strand, within ECD_03432at 3610.100 kb on + strand, within ECD_03432at 3610.100 kb on + strand, within ECD_03432at 3610.141 kb on + strand, within ECD_03432

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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3,607,258 + ECD_03430 0.24 -0.6
3,607,258 + ECD_03430 0.24 +0.2
3,607,259 - ECD_03430 0.24 -0.1
3,607,259 - ECD_03430 0.24 +0.2
3,607,259 - ECD_03430 0.24 -0.5
3,607,347 - ECD_03430 0.31 -0.1
3,607,402 + ECD_03430 0.35 +0.4
3,607,423 + ECD_03430 0.37 +0.4
3,607,427 - ECD_03430 0.37 +0.5
3,607,459 + ECD_03430 0.39 -0.7
3,607,459 + ECD_03430 0.39 -0.2
3,607,460 - ECD_03430 0.39 +0.8
3,607,516 + ECD_03430 0.44 +0.3
3,607,516 + ECD_03430 0.44 +0.0
3,607,517 - ECD_03430 0.44 +0.5
3,607,549 - ECD_03430 0.46 -0.7
3,607,694 + ECD_03430 0.58 +1.2
3,607,717 + ECD_03430 0.60 +0.4
3,607,718 - ECD_03430 0.60 -0.0
3,607,718 - ECD_03430 0.60 -0.0
3,607,718 - ECD_03430 0.60 +0.6
3,607,755 + ECD_03430 0.63 -0.5
3,607,755 + ECD_03430 0.63 +0.3
3,607,756 - ECD_03430 0.63 -0.5
3,607,756 - ECD_03430 0.63 +0.0
3,607,912 + ECD_03430 0.75 -0.4
3,607,913 - ECD_03430 0.75 +0.4
3,607,913 - ECD_03430 0.75 -0.1
3,607,966 - ECD_03430 0.79 -0.8
3,607,966 - ECD_03430 0.79 -0.3
3,608,065 + ECD_03430 0.87 +0.3
3,608,481 + ECD_03431 0.24 +0.3
3,608,481 + ECD_03431 0.24 -1.4
3,608,482 - ECD_03431 0.24 +0.0
3,608,661 + ECD_03431 0.42 +1.2
3,608,717 - ECD_03431 0.48 +0.2
3,608,831 + ECD_03431 0.59 +0.4
3,608,831 + ECD_03431 0.59 +0.6
3,608,832 - ECD_03431 0.59 -0.1
3,608,942 + ECD_03431 0.71 -0.1
3,608,988 + ECD_03431 0.75 +0.5
3,608,989 - ECD_03431 0.75 -0.5
3,608,989 - ECD_03431 0.75 -1.5
3,608,989 - ECD_03431 0.75 -1.0
3,608,989 - ECD_03431 0.75 -0.1
3,609,037 + ECD_03431 0.80 -1.9
3,609,041 + ECD_03431 0.81 +1.0
3,609,041 + ECD_03431 0.81 +0.1
3,609,041 + ECD_03431 0.81 +0.3
3,609,041 + ECD_03431 0.81 -0.8
3,609,042 - ECD_03431 0.81 +0.3
3,609,230 + +0.3
3,609,259 - -0.4
3,609,424 + ECD_03432 0.13 -0.3
3,609,425 - ECD_03432 0.13 -0.2
3,609,652 - ECD_03432 0.28 -0.2
3,609,652 - ECD_03432 0.28 -1.4
3,609,735 + ECD_03432 0.33 -0.0
3,609,766 + ECD_03432 0.35 +0.6
3,609,766 + ECD_03432 0.35 -0.8
3,609,767 - ECD_03432 0.35 +0.1
3,609,806 + ECD_03432 0.38 +0.3
3,609,807 - ECD_03432 0.38 +0.3
3,610,006 + ECD_03432 0.51 +0.6
3,610,063 - ECD_03432 0.55 -0.7
3,610,063 - ECD_03432 0.55 -1.7
3,610,085 + ECD_03432 0.57 -1.1
3,610,085 + ECD_03432 0.57 -0.4
3,610,086 - ECD_03432 0.57 +0.2
3,610,086 - ECD_03432 0.57 -0.1
3,610,086 - ECD_03432 0.57 +0.3
3,610,086 - ECD_03432 0.57 -0.8
3,610,086 - ECD_03432 0.57 -0.5
3,610,092 - ECD_03432 0.57 -0.7
3,610,092 - ECD_03432 0.57 +0.5
3,610,092 - ECD_03432 0.57 -0.0
3,610,100 + ECD_03432 0.58 +0.4
3,610,100 + ECD_03432 0.58 -0.7
3,610,141 + ECD_03432 0.60 -0.7

Or see this region's nucleotide sequence