Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02649 and ECD_02650 are separated by 4 nucleotides ECD_02650 and ECD_02651 overlap by 50 nucleotides ECD_02651 and ECD_02652 are separated by 3 nucleotides
ECD_02649: ECD_02649 - L-ribulokinase AraB-like protein, at 2,768,251 to 2,769,879
_02649
ECD_02650: ECD_02650 - D-ribose-binding periplasmic protein, at 2,769,884 to 2,770,957
_02650
ECD_02651: ECD_02651 - Ribose transport system permease protein rbsC, at 2,770,908 to 2,771,891
_02651
ECD_02652: ECD_02652 - hypothetical protein, at 2,771,895 to 2,773,394
_02652
Position (kb)
2769
2770
2771 Strain fitness (log2 ratio)
-2
-1
0
1 at 2768.974 kb on + strand, within ECD_02649 at 2769.109 kb on - strand, within ECD_02649 at 2769.227 kb on - strand, within ECD_02649 at 2769.232 kb on - strand, within ECD_02649 at 2769.232 kb on - strand, within ECD_02649 at 2769.256 kb on + strand, within ECD_02649 at 2769.271 kb on - strand, within ECD_02649 at 2769.507 kb on + strand, within ECD_02649 at 2769.508 kb on - strand, within ECD_02649 at 2769.508 kb on - strand, within ECD_02649 at 2769.508 kb on - strand, within ECD_02649 at 2769.508 kb on - strand, within ECD_02649 at 2769.508 kb on - strand, within ECD_02649 at 2769.508 kb on - strand, within ECD_02649 at 2769.508 kb on - strand, within ECD_02649 at 2769.508 kb on - strand, within ECD_02649 at 2769.510 kb on + strand, within ECD_02649 at 2769.511 kb on - strand, within ECD_02649 at 2769.511 kb on - strand, within ECD_02649 at 2769.588 kb on + strand, within ECD_02649 at 2769.832 kb on - strand at 2770.088 kb on - strand, within ECD_02650 at 2770.088 kb on - strand, within ECD_02650 at 2770.088 kb on - strand, within ECD_02650 at 2770.284 kb on - strand, within ECD_02650 at 2770.376 kb on - strand, within ECD_02650 at 2770.396 kb on + strand, within ECD_02650 at 2770.660 kb on - strand, within ECD_02650 at 2770.660 kb on - strand, within ECD_02650 at 2770.761 kb on - strand, within ECD_02650 at 2770.806 kb on - strand, within ECD_02650 at 2770.812 kb on + strand, within ECD_02650 at 2770.813 kb on - strand, within ECD_02650 at 2770.816 kb on + strand, within ECD_02650 at 2770.817 kb on - strand, within ECD_02650 at 2770.905 kb on - strand at 2770.932 kb on - strand at 2771.136 kb on + strand, within ECD_02651 at 2771.137 kb on - strand, within ECD_02651 at 2771.197 kb on - strand, within ECD_02651 at 2771.197 kb on - strand, within ECD_02651 at 2771.278 kb on - strand, within ECD_02651 at 2771.285 kb on - strand, within ECD_02651 at 2771.320 kb on + strand, within ECD_02651 at 2771.321 kb on - strand, within ECD_02651 at 2771.321 kb on - strand, within ECD_02651 at 2771.337 kb on + strand, within ECD_02651 at 2771.426 kb on - strand, within ECD_02651 at 2771.454 kb on - strand, within ECD_02651 at 2771.460 kb on - strand, within ECD_02651 at 2771.496 kb on - strand, within ECD_02651 at 2771.496 kb on - strand, within ECD_02651 at 2771.573 kb on + strand, within ECD_02651 at 2771.577 kb on - strand, within ECD_02651 at 2771.703 kb on - strand, within ECD_02651
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 2,768,974 + ECD_02649 0.44 -0.1 2,769,109 - ECD_02649 0.53 +0.9 2,769,227 - ECD_02649 0.60 +0.6 2,769,232 - ECD_02649 0.60 -0.2 2,769,232 - ECD_02649 0.60 +0.3 2,769,256 + ECD_02649 0.62 -0.4 2,769,271 - ECD_02649 0.63 +1.2 2,769,507 + ECD_02649 0.77 -1.0 2,769,508 - ECD_02649 0.77 -0.3 2,769,508 - ECD_02649 0.77 +1.4 2,769,508 - ECD_02649 0.77 +0.2 2,769,508 - ECD_02649 0.77 -1.5 2,769,508 - ECD_02649 0.77 +0.1 2,769,508 - ECD_02649 0.77 -0.6 2,769,508 - ECD_02649 0.77 +0.7 2,769,508 - ECD_02649 0.77 -0.2 2,769,510 + ECD_02649 0.77 +0.9 2,769,511 - ECD_02649 0.77 +0.4 2,769,511 - ECD_02649 0.77 +1.6 2,769,588 + ECD_02649 0.82 +0.6 2,769,832 - +0.2 2,770,088 - ECD_02650 0.19 +0.4 2,770,088 - ECD_02650 0.19 -1.3 2,770,088 - ECD_02650 0.19 +0.2 2,770,284 - ECD_02650 0.37 -0.8 2,770,376 - ECD_02650 0.46 +1.2 2,770,396 + ECD_02650 0.48 +0.2 2,770,660 - ECD_02650 0.72 -0.1 2,770,660 - ECD_02650 0.72 -0.9 2,770,761 - ECD_02650 0.82 -0.6 2,770,806 - ECD_02650 0.86 +0.8 2,770,812 + ECD_02650 0.86 -1.8 2,770,813 - ECD_02650 0.86 -1.8 2,770,816 + ECD_02650 0.87 -0.4 2,770,817 - ECD_02650 0.87 -0.1 2,770,905 - +0.3 2,770,932 - -0.3 2,771,136 + ECD_02651 0.23 -0.1 2,771,137 - ECD_02651 0.23 -0.3 2,771,197 - ECD_02651 0.29 -0.5 2,771,197 - ECD_02651 0.29 -0.0 2,771,278 - ECD_02651 0.38 +0.3 2,771,285 - ECD_02651 0.38 -0.2 2,771,320 + ECD_02651 0.42 +1.2 2,771,321 - ECD_02651 0.42 +1.2 2,771,321 - ECD_02651 0.42 +0.1 2,771,337 + ECD_02651 0.44 +0.4 2,771,426 - ECD_02651 0.53 +0.6 2,771,454 - ECD_02651 0.55 +0.2 2,771,460 - ECD_02651 0.56 +0.8 2,771,496 - ECD_02651 0.60 +0.0 2,771,496 - ECD_02651 0.60 +0.8 2,771,573 + ECD_02651 0.68 -0.6 2,771,577 - ECD_02651 0.68 +0.6 2,771,703 - ECD_02651 0.81 -0.0
Or see this region's nucleotide sequence