Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02378 and ECD_02379 overlap by 11 nucleotides ECD_02379 and ECD_02380 are separated by 9 nucleotides ECD_02380 and ECD_02381 overlap by 4 nucleotides
ECD_02378: ECD_02378 - hydrogenase 4, membrane subunit, at 2,471,404 to 2,472,984
_02378
ECD_02379: ECD_02379 - hydrogenase 4, subunit, at 2,472,974 to 2,474,641
_02379
ECD_02380: ECD_02380 - hydrogenase 4, Fe-S subunit, at 2,474,651 to 2,475,190
_02380
ECD_02381: ECD_02381 - hydrogenase 4, Fe-S subunit, at 2,475,187 to 2,475,945
_02381
Position (kb)
2472
2473
2474
2475 Strain fitness (log2 ratio)
-2
-1
0
1 at 2472.053 kb on + strand, within ECD_02378 at 2472.053 kb on + strand, within ECD_02378 at 2472.220 kb on + strand, within ECD_02378 at 2472.220 kb on + strand, within ECD_02378 at 2472.221 kb on - strand, within ECD_02378 at 2472.229 kb on - strand, within ECD_02378 at 2472.229 kb on - strand, within ECD_02378 at 2472.320 kb on + strand, within ECD_02378 at 2472.333 kb on + strand, within ECD_02378 at 2472.389 kb on + strand, within ECD_02378 at 2472.390 kb on - strand, within ECD_02378 at 2472.486 kb on - strand, within ECD_02378 at 2472.496 kb on + strand, within ECD_02378 at 2472.651 kb on + strand, within ECD_02378 at 2472.651 kb on + strand, within ECD_02378 at 2472.680 kb on + strand, within ECD_02378 at 2472.714 kb on - strand, within ECD_02378 at 2472.881 kb on + strand at 2472.881 kb on + strand at 2472.881 kb on + strand at 2472.881 kb on + strand at 2472.881 kb on + strand at 2472.881 kb on + strand at 2472.882 kb on - strand at 2473.120 kb on - strand at 2473.120 kb on - strand at 2473.186 kb on + strand, within ECD_02379 at 2473.187 kb on - strand, within ECD_02379 at 2473.205 kb on + strand, within ECD_02379 at 2473.208 kb on + strand, within ECD_02379 at 2473.209 kb on - strand, within ECD_02379 at 2473.346 kb on + strand, within ECD_02379 at 2473.347 kb on - strand, within ECD_02379 at 2473.347 kb on - strand, within ECD_02379 at 2473.414 kb on + strand, within ECD_02379 at 2473.415 kb on - strand, within ECD_02379 at 2473.415 kb on - strand, within ECD_02379 at 2473.543 kb on + strand, within ECD_02379 at 2473.544 kb on - strand, within ECD_02379 at 2473.622 kb on + strand, within ECD_02379 at 2473.623 kb on - strand, within ECD_02379 at 2473.623 kb on - strand, within ECD_02379 at 2473.733 kb on + strand, within ECD_02379 at 2473.786 kb on + strand, within ECD_02379 at 2473.787 kb on - strand, within ECD_02379 at 2473.789 kb on + strand, within ECD_02379 at 2473.790 kb on - strand, within ECD_02379 at 2474.317 kb on + strand, within ECD_02379 at 2474.322 kb on - strand, within ECD_02379 at 2474.324 kb on - strand, within ECD_02379 at 2474.462 kb on + strand, within ECD_02379 at 2474.526 kb on - strand at 2474.554 kb on - strand at 2474.640 kb on - strand at 2474.702 kb on + strand at 2474.770 kb on + strand, within ECD_02380 at 2474.770 kb on + strand, within ECD_02380 at 2474.770 kb on + strand, within ECD_02380 at 2474.771 kb on - strand, within ECD_02380 at 2474.963 kb on + strand, within ECD_02380 at 2474.985 kb on + strand, within ECD_02380 at 2475.186 kb on + strand at 2475.201 kb on + strand at 2475.359 kb on + strand, within ECD_02381 at 2475.415 kb on - strand, within ECD_02381 at 2475.454 kb on - strand, within ECD_02381 at 2475.473 kb on - strand, within ECD_02381
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 2,472,053 + ECD_02378 0.41 +0.1 2,472,053 + ECD_02378 0.41 +0.7 2,472,220 + ECD_02378 0.52 -0.2 2,472,220 + ECD_02378 0.52 +0.4 2,472,221 - ECD_02378 0.52 +0.1 2,472,229 - ECD_02378 0.52 -0.3 2,472,229 - ECD_02378 0.52 +1.0 2,472,320 + ECD_02378 0.58 +0.5 2,472,333 + ECD_02378 0.59 -0.6 2,472,389 + ECD_02378 0.62 +0.4 2,472,390 - ECD_02378 0.62 +0.8 2,472,486 - ECD_02378 0.68 -0.1 2,472,496 + ECD_02378 0.69 -1.1 2,472,651 + ECD_02378 0.79 +0.1 2,472,651 + ECD_02378 0.79 +1.3 2,472,680 + ECD_02378 0.81 +1.1 2,472,714 - ECD_02378 0.83 +0.0 2,472,881 + -0.5 2,472,881 + +0.7 2,472,881 + -1.0 2,472,881 + -0.7 2,472,881 + +0.2 2,472,881 + -0.9 2,472,882 - -1.0 2,473,120 - -0.0 2,473,120 - +1.0 2,473,186 + ECD_02379 0.13 -1.8 2,473,187 - ECD_02379 0.13 -0.1 2,473,205 + ECD_02379 0.14 -1.6 2,473,208 + ECD_02379 0.14 +0.7 2,473,209 - ECD_02379 0.14 +0.4 2,473,346 + ECD_02379 0.22 +0.9 2,473,347 - ECD_02379 0.22 +0.9 2,473,347 - ECD_02379 0.22 +0.6 2,473,414 + ECD_02379 0.26 -0.5 2,473,415 - ECD_02379 0.26 +0.8 2,473,415 - ECD_02379 0.26 -0.4 2,473,543 + ECD_02379 0.34 -2.5 2,473,544 - ECD_02379 0.34 +0.1 2,473,622 + ECD_02379 0.39 +0.1 2,473,623 - ECD_02379 0.39 +0.2 2,473,623 - ECD_02379 0.39 -0.0 2,473,733 + ECD_02379 0.46 -0.5 2,473,786 + ECD_02379 0.49 -1.0 2,473,787 - ECD_02379 0.49 -1.3 2,473,789 + ECD_02379 0.49 +0.2 2,473,790 - ECD_02379 0.49 +1.0 2,474,317 + ECD_02379 0.81 -1.5 2,474,322 - ECD_02379 0.81 -0.1 2,474,324 - ECD_02379 0.81 +0.4 2,474,462 + ECD_02379 0.89 -1.5 2,474,526 - +0.5 2,474,554 - -0.1 2,474,640 - -0.5 2,474,702 + -0.1 2,474,770 + ECD_02380 0.22 -0.5 2,474,770 + ECD_02380 0.22 +0.0 2,474,770 + ECD_02380 0.22 -1.7 2,474,771 - ECD_02380 0.22 +0.2 2,474,963 + ECD_02380 0.58 -0.4 2,474,985 + ECD_02380 0.62 -0.1 2,475,186 + -0.7 2,475,201 + +0.3 2,475,359 + ECD_02381 0.23 -0.7 2,475,415 - ECD_02381 0.30 -0.1 2,475,454 - ECD_02381 0.35 +0.3 2,475,473 - ECD_02381 0.38 -0.4
Or see this region's nucleotide sequence