Strain Fitness in Escherichia coli BL21 around ECD_02253

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02251 and ECD_02252 overlap by 1 nucleotidesECD_02252 and ECD_02253 overlap by 1 nucleotidesECD_02253 and ECD_02254 are separated by 3 nucleotides ECD_02251: ECD_02251 - Elongation Factor P Lys34 hydroxylase, at 2,331,456 to 2,332,004 _02251 ECD_02252: ECD_02252 - TauE/TSUP family inner membrane protein, at 2,332,004 to 2,332,813 _02252 ECD_02253: ECD_02253 - murein DD-endopeptidase, at 2,332,813 to 2,333,637 _02253 ECD_02254: ECD_02254 - chorismate synthase, at 2,333,641 to 2,334,726 _02254 Position (kb) 2332 2333 2334Strain fitness (log2 ratio) -1 0 1at 2331.880 kb on - strand, within ECD_02251at 2331.902 kb on - strand, within ECD_02251at 2331.939 kb on - strand, within ECD_02251at 2331.963 kb on - strandat 2332.005 kb on + strandat 2332.006 kb on - strandat 2332.006 kb on - strandat 2332.056 kb on - strandat 2332.395 kb on + strand, within ECD_02252at 2332.425 kb on - strand, within ECD_02252at 2332.447 kb on - strand, within ECD_02252at 2332.488 kb on - strand, within ECD_02252at 2332.597 kb on + strand, within ECD_02252at 2332.602 kb on + strand, within ECD_02252at 2332.603 kb on - strand, within ECD_02252at 2332.606 kb on + strand, within ECD_02252at 2332.607 kb on - strand, within ECD_02252at 2332.607 kb on - strand, within ECD_02252at 2332.789 kb on + strandat 2332.801 kb on + strandat 2332.814 kb on + strandat 2332.997 kb on - strand, within ECD_02253at 2332.997 kb on - strand, within ECD_02253at 2332.997 kb on - strand, within ECD_02253at 2333.002 kb on + strand, within ECD_02253at 2333.003 kb on - strand, within ECD_02253at 2333.003 kb on - strand, within ECD_02253at 2333.435 kb on + strand, within ECD_02253at 2333.466 kb on - strand, within ECD_02253at 2333.506 kb on - strand, within ECD_02253at 2333.515 kb on - strand, within ECD_02253at 2333.515 kb on - strand, within ECD_02253at 2333.818 kb on - strand, within ECD_02254at 2334.401 kb on + strand, within ECD_02254at 2334.402 kb on - strand, within ECD_02254at 2334.433 kb on - strand, within ECD_02254

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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2,331,880 - ECD_02251 0.77 +0.8
2,331,902 - ECD_02251 0.81 +0.1
2,331,939 - ECD_02251 0.88 +0.8
2,331,963 - -0.0
2,332,005 + -0.1
2,332,006 - -0.3
2,332,006 - +0.8
2,332,056 - -0.3
2,332,395 + ECD_02252 0.48 -0.0
2,332,425 - ECD_02252 0.52 +0.4
2,332,447 - ECD_02252 0.55 +0.5
2,332,488 - ECD_02252 0.60 +0.2
2,332,597 + ECD_02252 0.73 -0.6
2,332,602 + ECD_02252 0.74 +0.5
2,332,603 - ECD_02252 0.74 -0.2
2,332,606 + ECD_02252 0.74 -0.5
2,332,607 - ECD_02252 0.74 +1.1
2,332,607 - ECD_02252 0.74 -1.1
2,332,789 + +0.2
2,332,801 + +0.1
2,332,814 + -0.0
2,332,997 - ECD_02253 0.22 +0.4
2,332,997 - ECD_02253 0.22 -0.5
2,332,997 - ECD_02253 0.22 -0.6
2,333,002 + ECD_02253 0.23 -0.8
2,333,003 - ECD_02253 0.23 -0.3
2,333,003 - ECD_02253 0.23 +0.1
2,333,435 + ECD_02253 0.75 -0.9
2,333,466 - ECD_02253 0.79 -0.3
2,333,506 - ECD_02253 0.84 -0.4
2,333,515 - ECD_02253 0.85 +0.6
2,333,515 - ECD_02253 0.85 -0.9
2,333,818 - ECD_02254 0.16 -1.7
2,334,401 + ECD_02254 0.70 +0.5
2,334,402 - ECD_02254 0.70 -0.9
2,334,433 - ECD_02254 0.73 -0.5

Or see this region's nucleotide sequence