Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02251 and ECD_02252 overlap by 1 nucleotides ECD_02252 and ECD_02253 overlap by 1 nucleotides ECD_02253 and ECD_02254 are separated by 3 nucleotides
ECD_02251: ECD_02251 - Elongation Factor P Lys34 hydroxylase, at 2,331,456 to 2,332,004
_02251
ECD_02252: ECD_02252 - TauE/TSUP family inner membrane protein, at 2,332,004 to 2,332,813
_02252
ECD_02253: ECD_02253 - murein DD-endopeptidase, at 2,332,813 to 2,333,637
_02253
ECD_02254: ECD_02254 - chorismate synthase, at 2,333,641 to 2,334,726
_02254
Position (kb)
2332
2333
2334 Strain fitness (log2 ratio)
-1
0
1 at 2331.880 kb on - strand, within ECD_02251 at 2331.902 kb on - strand, within ECD_02251 at 2331.939 kb on - strand, within ECD_02251 at 2331.963 kb on - strand at 2332.005 kb on + strand at 2332.006 kb on - strand at 2332.006 kb on - strand at 2332.056 kb on - strand at 2332.395 kb on + strand, within ECD_02252 at 2332.425 kb on - strand, within ECD_02252 at 2332.447 kb on - strand, within ECD_02252 at 2332.488 kb on - strand, within ECD_02252 at 2332.597 kb on + strand, within ECD_02252 at 2332.602 kb on + strand, within ECD_02252 at 2332.603 kb on - strand, within ECD_02252 at 2332.606 kb on + strand, within ECD_02252 at 2332.607 kb on - strand, within ECD_02252 at 2332.607 kb on - strand, within ECD_02252 at 2332.789 kb on + strand at 2332.801 kb on + strand at 2332.814 kb on + strand at 2332.997 kb on - strand, within ECD_02253 at 2332.997 kb on - strand, within ECD_02253 at 2332.997 kb on - strand, within ECD_02253 at 2333.002 kb on + strand, within ECD_02253 at 2333.003 kb on - strand, within ECD_02253 at 2333.003 kb on - strand, within ECD_02253 at 2333.435 kb on + strand, within ECD_02253 at 2333.466 kb on - strand, within ECD_02253 at 2333.506 kb on - strand, within ECD_02253 at 2333.515 kb on - strand, within ECD_02253 at 2333.515 kb on - strand, within ECD_02253 at 2333.818 kb on - strand, within ECD_02254 at 2334.401 kb on + strand, within ECD_02254 at 2334.402 kb on - strand, within ECD_02254 at 2334.433 kb on - strand, within ECD_02254
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 2,331,880 - ECD_02251 0.77 +0.8 2,331,902 - ECD_02251 0.81 +0.1 2,331,939 - ECD_02251 0.88 +0.8 2,331,963 - -0.0 2,332,005 + -0.1 2,332,006 - -0.3 2,332,006 - +0.8 2,332,056 - -0.3 2,332,395 + ECD_02252 0.48 -0.0 2,332,425 - ECD_02252 0.52 +0.4 2,332,447 - ECD_02252 0.55 +0.5 2,332,488 - ECD_02252 0.60 +0.2 2,332,597 + ECD_02252 0.73 -0.6 2,332,602 + ECD_02252 0.74 +0.5 2,332,603 - ECD_02252 0.74 -0.2 2,332,606 + ECD_02252 0.74 -0.5 2,332,607 - ECD_02252 0.74 +1.1 2,332,607 - ECD_02252 0.74 -1.1 2,332,789 + +0.2 2,332,801 + +0.1 2,332,814 + -0.0 2,332,997 - ECD_02253 0.22 +0.4 2,332,997 - ECD_02253 0.22 -0.5 2,332,997 - ECD_02253 0.22 -0.6 2,333,002 + ECD_02253 0.23 -0.8 2,333,003 - ECD_02253 0.23 -0.3 2,333,003 - ECD_02253 0.23 +0.1 2,333,435 + ECD_02253 0.75 -0.9 2,333,466 - ECD_02253 0.79 -0.3 2,333,506 - ECD_02253 0.84 -0.4 2,333,515 - ECD_02253 0.85 +0.6 2,333,515 - ECD_02253 0.85 -0.9 2,333,818 - ECD_02254 0.16 -1.7 2,334,401 + ECD_02254 0.70 +0.5 2,334,402 - ECD_02254 0.70 -0.9 2,334,433 - ECD_02254 0.73 -0.5
Or see this region's nucleotide sequence