Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02043 and ECD_02044 are separated by 131 nucleotides ECD_02044 and ECD_02045 are separated by 140 nucleotides
ECD_02043: ECD_02043 - antiporter inner membrane protein, at 2,087,922 to 2,089,031
_02043
ECD_02044: ECD_02044 - methionyl-tRNA synthetase, at 2,089,163 to 2,091,196
_02044
ECD_02045: ECD_02045 - molybdate metabolism regulator, at 2,091,337 to 2,095,131
_02045
Position (kb)
2089
2090
2091
2092 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2088.179 kb on + strand, within ECD_02043 at 2088.188 kb on + strand, within ECD_02043 at 2088.188 kb on + strand, within ECD_02043 at 2088.188 kb on + strand, within ECD_02043 at 2088.512 kb on + strand, within ECD_02043 at 2088.513 kb on - strand, within ECD_02043 at 2088.524 kb on + strand, within ECD_02043 at 2088.592 kb on + strand, within ECD_02043 at 2088.593 kb on - strand, within ECD_02043 at 2088.671 kb on + strand, within ECD_02043 at 2088.723 kb on - strand, within ECD_02043 at 2089.049 kb on - strand at 2089.049 kb on - strand at 2089.051 kb on - strand at 2089.054 kb on + strand at 2089.070 kb on - strand at 2089.075 kb on - strand at 2089.128 kb on + strand at 2089.128 kb on + strand at 2090.803 kb on + strand, within ECD_02044 at 2090.836 kb on + strand, within ECD_02044 at 2091.194 kb on + strand at 2092.166 kb on + strand, within ECD_02045
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 2,088,179 + ECD_02043 0.23 +1.1 2,088,188 + ECD_02043 0.24 -1.5 2,088,188 + ECD_02043 0.24 +0.5 2,088,188 + ECD_02043 0.24 +3.3 2,088,512 + ECD_02043 0.53 +0.2 2,088,513 - ECD_02043 0.53 -0.4 2,088,524 + ECD_02043 0.54 +0.4 2,088,592 + ECD_02043 0.60 -1.3 2,088,593 - ECD_02043 0.60 +0.4 2,088,671 + ECD_02043 0.67 +0.7 2,088,723 - ECD_02043 0.72 +0.4 2,089,049 - -1.0 2,089,049 - +0.1 2,089,051 - -0.3 2,089,054 + -0.4 2,089,070 - +0.4 2,089,075 - +0.6 2,089,128 + -1.9 2,089,128 + -1.0 2,090,803 + ECD_02044 0.81 +1.2 2,090,836 + ECD_02044 0.82 -0.3 2,091,194 + -0.7 2,092,166 + ECD_02045 0.22 -0.7
Or see this region's nucleotide sequence